PaperBLAST – Find papers about a protein or its homologs

 

Align WP_001554005.1 to PF06545 (DUF1116)

WP_001554005.1 has 419 amino acids

Query:       DUF1116  [M=215]
Accession:   PF06545.15
Description: Protein of unknown function (DUF1116)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.3e-102  326.3   1.1   5.8e-102  325.8   1.1    1.2  1  WP_001554005.1  


Domain annotation for each sequence (and alignments):
>> WP_001554005.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.8   1.1  5.8e-102  5.8e-102       1     215 []      87     302 ..      87     302 .. 0.99

  Alignments for each domain:
  == domain 1  score: 325.8 bits;  conditional E-value: 5.8e-102
         DUF1116   1 ielepahdhsavgpmagvvspsmpvlvvedktegnrayctlneGlgkvlrfGayseevlerLrwmedvlapvlaeale.keggidlkaliaqalq 94 
                     +++ p+h+++avgpm+g++s+smp+lvve+ t+gnrayc+lneG+gkv+rfGay+e+vl+r rwm+dvl+pvl++al  +e+gidl+a++aq+++
  WP_001554005.1  87 VNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGrMERGIDLTAMMAQGIT 181
                     789**************************************************************************9899************** PP

         DUF1116  95 mGDelHnRnkaatslllrelapalveadaekeekaevlkflaendqfflnlamaaakavldaaegiegstlvtamarnGtefGirvsglgdeWft 189
                     mGDe+H+Rn+a+++ll+r+lap+++ +d++k+++aev++fl+ +dqfflnlama++ka++da + i+++++vtam+rnG+ fGirvsglg++Wft
  WP_001554005.1 182 MGDEFHQRNIASSALLMRTLAPQIACLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT 276
                     *********************************************************************************************** PP

         DUF1116 190 apaeapegllfpgfseedanpdiGDS 215
                     ap+++p+gl+f+gfs+e+anpd+GDS
  WP_001554005.1 277 APVNTPQGLFFTGFSQEQANPDMGDS 302
                     *************************9 PP



Or compare WP_001554005.1 to CDD or PaperBLAST