PaperBLAST – Find papers about a protein or its homologs

 

Align WP_003644490.1 to PF02153 (PDH_N)

WP_003644490.1 has 365 amino acids

Query:       PDH_N  [M=154]
Accession:   PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-39  120.2   0.2    4.3e-39  119.6   0.2    1.2  1  WP_003644490.1  


Domain annotation for each sequence (and alignments):
>> WP_003644490.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.2   4.3e-39   4.3e-39       1     151 [.      16     168 ..      16     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 4.3e-39
           PDH_N   1 laralrrkgfkvtvigydideekakaalelglvdeatdd.ieavkeadivllavPvevilevlkelap.hlkedalitDvgsvKekvvkelekll 93 
                     la+++++ +++v +ig+d+d+ + + a++ g++d+  +d  + +++ad+++la Pv+vi   l+ la   lk ++l+tDvgs+K+ v++++ ++ 
  WP_003644490.1  16 LALSIKQAHPTVHIIGIDRDDVSLSYARQQGMIDASGTDlAAVASDADVIILAGPVDVIVADLHRLAMmPLKAGVLVTDVGSTKQVVMHAALAIQ 110
                     699************************************45556899*****************999867*********************9999 PP

           PDH_N  94 k.gksfvgghPmaGteksGvdaareelfenavviLtPtektdkealelvkelleevgar 151
                     + g++f+gghPmaG++ksGv a+r++lfena++ L P   t++ a++ ++ ll+ + ++
  WP_003644490.1 111 QhGVTFIGGHPMAGSHKSGVTAGRANLFENAFYLLVPGR-TNQAAVQRLQALLQATHVK 168
                     999***********************************9.999********99988776 PP



Or compare WP_003644490.1 to CDD or PaperBLAST