PaperBLAST – Find papers about a protein or its homologs

 

Align WP_003728794.1 to TIGR00110

WP_003728794.1 has 564 amino acids

Query:       TIGR00110  [M=543]
Accession:   TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-235  767.8   4.0   3.3e-235  767.6   4.0    1.0  1  WP_003728794.1  


Domain annotation for each sequence (and alignments):
>> WP_003728794.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  767.6   4.0  3.3e-235  3.3e-235       1     542 [.      14     557 ..      14     558 .. 0.98

  Alignments for each domain:
  == domain 1  score: 767.6 bits;  conditional E-value: 3.3e-235
       TIGR00110   1 aarallkatGlkde..dlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvk 93 
                     +ar+ll+atG  +   d++kP+ia++nsy++ivPghvhl++la+++ke+i++aGg+++efnti+v+DGiamgh Gm+ysLpsre+iaD+ etv++
  WP_003728794.1  14 PARSLLHATGQIKSpgDMDKPFIAICNSYIDIVPGHVHLRELADVAKEAIREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSREVIADAAETVIN 108
                     579*******866444******************************************************************************* PP

       TIGR00110  94 ahalDalvvissCDkivPGmlmaalrlniPaivvsGGpmeagktklsekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansm 188
                     ah++D++  i++CDki+PGml+a++r+n+Pai+ sGGpm+ag  + ++ ++l++vfeavg+ ++g +s+e+  ++e +acPt+gsC+G+ftansm
  WP_003728794.1 109 AHWFDGVFYIPNCDKITPGMLLASVRTNVPAIFCSGGPMKAGLSAHGKALTLSSVFEAVGAFKDGSMSQEDFLDMEANACPTCGSCAGMFTANSM 203
                     *********************************************************************************************** PP

       TIGR00110 189 acltealGlslPgsstllatsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeagv.klslddfdrls 282
                     +cl+e lG+++Pg++t+la+s  +++l+++s+ ++++lvkk+i+Prdi+tk+a+++a++ld+a+GGstntvLh+la+a+eag+ +++l++++ ++
  WP_003728794.1 204 NCLMEILGMAVPGNGTTLAVSDARRDLIRESAFHLMDLVKKDIRPRDIITKDAIDDAFALDMAMGGSTNTVLHTLALANEAGIeDYDLERINDIA 298
                     **********************************************************************************637********** PP

       TIGR00110 283 rkvPllaklkPsgkkviedlhraGGvsavlkeldk.egllhkdaltvtGktlaetlekvkvlrvdqdvirsldnpvkkegglavLkGnlaeeGav 376
                     ++vP l+k++Ps+++ ++d+h+aGGvsa++kel    g++h d +tvtGkt+ e+++++k++  ++dvi++++np++  ggl +L+Gn+a++Ga 
  WP_003728794.1 299 KRVPYLSKIAPSSSYSMHDVHEAGGVSAIVKELVDlGGAIHPDRITVTGKTIRENVADAKIN--NTDVIHPKENPYSPVGGLSMLFGNIAPKGAA 391
                     ********************************987689***********************9..9****************************** PP

       TIGR00110 377 vkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsP 471
                     +k++gv+ ++ +f+G+a  f s++ea+eai +  v+eG+vvviryeGPkGgPGm+emLaPts +vg GLgk+vaLitDGrfsG+trG+++Gh+sP
  WP_003728794.1 392 IKVGGVDPSVQVFKGEAICFSSHDEAVEAIDNHTVREGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISP 486
                     *********************************************************************************************** PP

       TIGR00110 472 eaaegGaialvedGDkikiDienrkldlevseeelaerrakakkkearevkgaLakyaklvssadkGavld 542
                     eaa+gG+ialv+dGD+i+iD++nr+l+++v +e l+err++  k +a+ + g+La+y+ lv+sa++G++l+
  WP_003728794.1 487 EAAAGGPIALVHDGDIITIDLPNRTLNVDVPDEVLEERRKELPKFKAKVKTGYLARYTALVTSAHTGGILQ 557
                     ********************************************9*9*********************987 PP



Or compare WP_003728794.1 to CDD or PaperBLAST