PaperBLAST – Find papers about a protein or its homologs

 

Align WP_004385823.1 to PF06551 (DUF1120)

WP_004385823.1 has 216 amino acids

Query:       DUF1120  [M=116]
Accession:   PF06551.16
Description: Protein of unknown function (DUF1120)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-18   53.7   7.3    2.1e-17   49.6   3.5    2.2  2  WP_004385823.1  


Domain annotation for each sequence (and alignments):
>> WP_004385823.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   3.5   2.1e-17   2.1e-17       1      72 [.      26     103 ..      26     110 .. 0.93
   2 !    6.6   0.1   0.00048   0.00048      94     115 ..     105     126 ..     101     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2.1e-17
         DUF1120   1 lkvtGeltagaCtPvlsgGGvvdyGtkavsaLsat......klnqlGtkditltitCeaatkiavtakDnradsival 72 
                     lkvtG+lt +aC P   +GGv++ G++ + ++++t      + + + +k + ltitC+a t +++t++Dn++ +i a 
  WP_004385823.1  26 LKVTGTLTLTACNPTFENGGVINLGHIPIGNMTTTdndkayEAVSVQHKKVDLTITCTADTALGFTITDNKEGTIPAS 103
                     79*********************************999888889999*************************998765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00048
         DUF1120  94 vkqttrafGlGktkdgkkiGay 115
                     v++   a+G G+t+d+k iG y
  WP_004385823.1 105 VSDYGGAYGFGNTADNKAIGLY 126
                     6666779*************87 PP



Or compare WP_004385823.1 to CDD or PaperBLAST