PaperBLAST – Find papers about a protein or its homologs

 

Align WP_009903837.1 to PF04343 (DUF488)

WP_009903837.1 has 205 amino acids

Query:       DUF488  [M=121]
Accession:   PF04343.18
Description: Domain of unknown function DUF488
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-25   74.2   0.0    1.1e-24   73.7   0.0    1.3  1  WP_009903837.1  


Domain annotation for each sequence (and alignments):
>> WP_009903837.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   1.1e-24   1.1e-24       3     118 ..      14     128 ..      12     131 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.1e-24
          DUF488   3 erfydllkadgvrvlvDVRlwPrSr.kpgfskealkedlkeagiaYvwlke.lgpsrelrkwfkhdpkweeffrrYaaelesaaakealeelkel 95 
                     ++++++ k++ ++++vD+R++P+S+ + +++kea++e+l+++g+ Y+++ + +g++r +++ +      +e  +++++ ++++ + +++e+lk++
  WP_009903837.1  14 DKLINMIKKYDINCVVDIRETPYSKyNIQYNKEAFNESLRNSGFLYIYMGKeFGAKRTNKDVYT-----QEGYADFEKVAKEDIFLNGIERLKKG 103
                     678999*******************************************876999999999999.....899*********************** PP

          DUF488  96 akkg..vtLlcaekdperchrrvla 118
                     ++ g  ++Ll a ++p rchr++l 
  WP_009903837.1 104 CQMGyrIVLLGAMQEPIRCHRSILV 128
                     ***********************96 PP



Or compare WP_009903837.1 to CDD or PaperBLAST