PaperBLAST – Find papers about a protein or its homologs

 

Align WP_011023683.1 to PF01170 (UPF0020)

WP_011023683.1 has 249 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-13   36.9   0.0    2.6e-13   36.2   0.0    1.3  1  WP_011023683.1  


Domain annotation for each sequence (and alignments):
>> WP_011023683.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.6e-13   2.6e-13      77     128 ..      99     149 ..      87     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.6e-13
         UPF0020  77 lklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtn 128
                      k++g+D+ +++v++a++Na+k+g +  +ef+q d+ +L+l++ +vdvi++n
  WP_011023683.1  99 GKVIGVDMTQEMVKKAQDNARKYGYS-NVEFRQGDIEALPLDDRSVDVIISN 149
                     469*********************97.69***********9999*******9 PP



Or compare WP_011023683.1 to CDD or PaperBLAST