PaperBLAST – Find papers about a protein or its homologs

 

Align WP_011228073.1 to PF02965 (Met_synt_B12)

WP_011228073.1 has 1185 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.22
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-40  124.2   0.0    5.1e-40  123.7   0.0    1.3  1  WP_011228073.1  


Domain annotation for each sequence (and alignments):
>> WP_011228073.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   5.1e-40   5.1e-40      34     257 ..     956    1184 ..     921    1185 .] 0.88

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 5.1e-40
    Met_synt_B12   34 geeakklfkdAqamLkkiieekllkakavvglfpansvgddievyadesrseelatlhtLrqqaekeegepnlclaDfvapk........... 115 
                      ++ea+ +f   q++Lk+ ++e +l+ k ++g+fp  ++g+++ v++ e+  e+l+++++ rq+         l+l D+ +p+           
  WP_011228073.1  956 EREAEPVF---QRLLKEAMAEGWLEPKVLYGFFPVAREGEELLVFSPET-GEVLERFRFPRQK------GGGLSLVDYFRPRfaaplgdeadw 1038
                      45555555...68*******************************97777.5678999999988......456999999999999999999999 PP

    Met_synt_B12  116 ......esgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgyakdeklsneelikekYqGiRpAp 202 
                            ++g +D++G+  vt+g   +++a+++ a+      + v+  +  ++eA+ae+ h+++r+ +Wg a++++ ++++l+++ YqG R+++
  WP_011228073.1 1039 mpkeafRAGARDVLGVQLVTMGEAPSRKAQALFASGAYQDYLFVHGFSVEMTEALAEYWHKRMRQ-MWGIAHQDATEIQKLFQQGYQGARYSF 1130
                      99999999***************9999999988885555568899*******************7.7************************** PP

    Met_synt_B12  203 GYpacpdhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFav 257 
                      GYpacpd   +++l +l+ +++ +g++Lte++ + P+ + s+l++ hpe++yF+v
  WP_011228073.1 1131 GYPACPDLADQAKLDRLMGFHR-VGVRLTENFQLEPEHATSALVVHHPEARYFSV 1184
                      *********************9.******************************99 PP



Or compare WP_011228073.1 to CDD or PaperBLAST