PaperBLAST – Find papers about a protein or its homologs

 

Align WP_011692381.1 to TIGR00110

WP_011692381.1 has 573 amino acids

Query:       TIGR00110  [M=543]
Accession:   TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-225  735.6   3.0   2.1e-225  735.3   3.0    1.0  1  WP_011692381.1  


Domain annotation for each sequence (and alignments):
>> WP_011692381.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  735.3   3.0  2.1e-225  2.1e-225       2     539 ..      31     570 ..      30     572 .. 0.99

  Alignments for each domain:
  == domain 1  score: 735.3 bits;  conditional E-value: 2.1e-225
       TIGR00110   2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkaha 96 
                     ar +++a+G+ d+d+ kP+i+v++s++ei+P++++l+ la+ +ke+++a Gg +++f+ti+vsDGi+mgheGm++sL+sre+iaDsvetv++a++
  WP_011692381.1  31 ARGMFRAVGMGDDDFAKPQIGVASSWNEITPCNLSLNRLAQGAKEGVHAGGGFPMQFGTISVSDGISMGHEGMHFSLVSREVIADSVETVMQAER 125
                     799******************************************************************************************** PP

       TIGR00110  97 lDalvvissCDkivPGmlmaalrlniPaivvsGGpmeagktkl....sekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftans 187
                     +D+ v+++ CDk +PGmlmaa+rl++ +++ + G++++g +kl     ++++l+d+feavg++aagk+s  +l++ier  cP+ g+C+G++tan+
  WP_011692381.1 126 IDGSVLLAGCDKSLPGMLMAAARLDLASVFLYAGSIMPGWVKLedgsEKEVTLIDAFEAVGACAAGKMSRGDLDRIERAICPGEGACGGMYTANT 220
                     ****************************************9998876789********************************************* PP

       TIGR00110 188 macltealGlslPgsstllatsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrls 282
                     mac+ ealG+slPgs++ ++++ ++ e+a+ksg+ +v+l++  i+ rdi+tk+afenai++ +a GGstn+vLhllaia+ea+v+l+lddf+r+ 
  WP_011692381.1 221 MACIGEALGMSLPGSAAPPSADRRRDEFARKSGEAVVNLLRLGITARDIMTKKAFENAIAVTMAFGGSTNAVLHLLAIAREAEVELTLDDFNRIG 315
                     *********************************************************************************************** PP

       TIGR00110 283 rkvPllaklkPsgkkviedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlrvdqdvirsldnpvkkegglavLkGnlaeeGavv 377
                     +k+P+l++lkP g++v++d+++ GGv+ ++k l  +gllh d+ltvtGktlae+l++++   +d +++r+ldnp++k+gg+ +L+G++a+eGavv
  WP_011692381.1 316 DKIPHLGDLKPFGRYVMTDVDKIGGVPVIMKALLDAGLLHGDCLTVTGKTLAENLASINPPDLDGKILRALDNPIHKTGGITILHGSMAPEGAVV 410
                     *************************************************************99******************************** PP

       TIGR00110 378 kiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPe 472
                     k ag +    +feG+a+vfe e+ al+a+ +gk+++GdvvviryeGPkGgPGmremLa t a++g+GLgk+v L+tDGrfsGgt+Gl+iGhv+Pe
  WP_011692381.1 411 KSAGFDA--DVFEGTARVFEREQGALDALDNGKINKGDVVVIRYEGPKGGPGMREMLAITGAIKGAGLGKDVLLLTDGRFSGGTTGLCIGHVAPE 503
                     ******9..679*********************************************************************************** PP

       TIGR00110 473 aaegGaialvedGDkikiDienrkldlevseeelaerrakakkkearevkgaLakyaklvssadkGa 539
                     a+ gG+ia+v+dGD+i++Di +r +dl v+e+el++r+  +++  a+ +kg+Lakyaklv sa++Ga
  WP_011692381.1 504 AVDGGPIAFVKDGDRIRVDIAARSFDLLVDEAELESRKVGWEPLPAKFTKGVLAKYAKLVHSASTGA 570
                     ******************************************************************9 PP



Or compare WP_011692381.1 to CDD or PaperBLAST