PaperBLAST – Find papers about a protein or its homologs

 

Align WP_012349938.1 to PF01930 (Cas_Cas4)

WP_012349938.1 has 180 amino acids

Query:       Cas_Cas4  [M=161]
Accession:   PF01930.21
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-21   62.0   0.0    4.6e-21   61.7   0.0    1.0  1  WP_012349938.1  


Domain annotation for each sequence (and alignments):
>> WP_012349938.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   4.6e-21   4.6e-21       6     159 ..      15     172 ..      11     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 4.6e-21
        Cas_Cas4   6 nyyliCkrklwlfsheitmeeeselvelGkliheesykrek.......keveise...sikiDvvkkekeklvvvevKkskkieeaaklQllyYl 90 
                       +  C+r lwl +++  +     +++ G++ ++   k+         k v i+    ++++D+v  +++ +v+ve+K + + ++++k+Ql++ +
  WP_012349938.1  15 LELEWCPRYLWLSKRHGVPTTP--SMAKGRQEEQALRKKLAaalgaepKPVYIDAgwtHGVVDMVA-RRHSAVPVEIKTGVP-RREHKWQLYAEA 105
                     56789**********9999998..6777**998844444223455567*****557999*******.9999*********99.889********* PP

        Cas_Cas4  91 llLekkgieak.GvleypkekkreevelteedreeleeaikeieeiissekppepkkkkiCkkCayaelC 159
                     +l++ +g  ++ Gv+ y +     ++++t ++ + +e  + ++ e+++   pp+p+k+++C  C y+ +C
  WP_012349938.1 106 YLVKAQGHSVSlGVIAYGER--LARLQITPAELKVAEALLIKAAEVVEG-PPPPPRKTPKCAYCQYRPIC 172
                     *****************985..66788999******************9.8999**************** PP



Or compare WP_012349938.1 to CDD or PaperBLAST