PaperBLAST – Find papers about a protein or its homologs

 

Align WP_013310539.1 to PF02965 (Met_synt_B12)

WP_013310539.1 has 1146 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-63  200.2   0.0    3.8e-63  199.5   0.0    1.3  1  WP_013310539.1  


Domain annotation for each sequence (and alignments):
>> WP_013310539.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.0   3.8e-63   3.8e-63       2     260 ..     896    1146 .]     895    1146 .] 0.95

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 3.8e-63
    Met_synt_B12    2 leelveyidWtpff.qaWelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpAnsegddievyadesrseelatlhtL 93  
                      l+ +++y++ ++   +  +lkg+ +++l +e    +a +l +   +++ + +++  ++a+a++++fpA+s+g++i +y+ ++ s++l+t+++ 
  WP_013310539.1  896 LNYILPYVNMQMLMgHHLGLKGNVEQLLASE--DPKAIQLKETVDSIMFEAVTDGIIQAHAMYRFFPAQSQGNQILIYDPSDVSKVLHTFTFP 986 
                      6778888888887646789999999999977..668899999999999999***************************99999********** PP

    Met_synt_B12   94 rqqaekeegkpnlclaDfvapkesgvkDyiGlFavtaglgieelakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdekls 186 
                      rqq      +p+lclaDf+++ esgv Dy+G+++vtag+gi+++ ++++++ d  ++  ++a+a  +ae +ae+lh+ +r+  Wg+    +++
  WP_013310539.1  987 RQQV-----EPYLCLADFLKSVESGVMDYVGFMVVTAGHGIQQISTRWKDKGDYLRSHALQAVALEVAEGLAERLHHIIRD-SWGFPDPADMT 1073
                      ***4.....69******************************************************************9997.6********** PP

    Met_synt_B12  187 neelikekYqgiRpApGYpacpdhtekktlfelldaeekigieLteslamtPaasvsGlyfahpearyFavgki 260 
                      +++ +  +YqgiR ++GYpacpd + +  lf+ll+ e+ ig+eLte ++m P+asvs+++f+hp+a+yF+v+k+
  WP_013310539.1 1074 MKQRHGARYQGIRVSFGYPACPDLEDQGPLFQLLKPED-IGVELTEGFMMEPEASVSAMVFSHPQAQYFNVEKV 1146
                      *************************************9.********************************996 PP



Or compare WP_013310539.1 to CDD or PaperBLAST