PaperBLAST – Find papers about a protein or its homologs

 

Align WP_014709752.1 to PF06980 (DUF1302)

WP_014709752.1 has 435 amino acids

Query:       DUF1302  [M=541]
Accession:   PF06980.17
Description: Protein of unknown function (DUF1302)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-16   44.8   1.8    4.4e-13   35.0   0.0    3.8  3  WP_014709752.1  


Domain annotation for each sequence (and alignments):
>> WP_014709752.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   4.4e-13   4.4e-13     139     216 ..     104     174 ..       6     182 .. 0.78
   2 !    1.5   0.0    0.0063    0.0063     277     365 ..     218     302 ..     184     377 .. 0.63
   3 ?    0.8   0.6      0.01      0.01     493     541 .]     390     435 .]     326     435 .] 0.79

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 4.4e-13
         DUF1302 139 eagrgaelldaYvygsfdlgdrplsvRlGrQvvnWGeslf..vlnGinq.inplDvsklrrpGae.lkeallPvpmvsaslq 216
                     +   g+el++aY+++     ++++++R+GrQ+v+WG ++   v     + ++p+D++ +    a+  +++++Pv+ ++a++ 
  WP_014709752.1 104 KERTGLELREAYLSY----AKGNFDLRVGRQIVVWGVADAlrV----TDcVSPFDYTEF---LAQdYDDIRMPVNGLRAKYT 174
                     346799*******55....569******************543....777******999...443399**********9985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.0063
         DUF1302 277 raadkepsdsgqwGlalrylaeel..tefglyylnyhsrlPvlsgasaavdadnaayfleY.pediklyGaSfnttlgggtavagEvsYrpd 365
                       +++++ ++ ++G +++    +l   +f++ +l++ ++   l    +a + d+ + +++  +++  ++Ga  +  +g ++ +++Ev+   +
  WP_014709752.1 218 SGKPEKKIKNMEFGGRASV---NLsgIDFSVSALRTWNKQSALC---PALSGDGRTLHINGqYRRMTMLGADCSLPVG-QFVLRAEVAEYIG 302
                     4556666677777777777...3357888888888888877666...5666777777777778888888888888885.8888888874444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.01
         DUF1302 493 Grkavslgltfdylsnwkvdlgytaffggddq.nalrDrDfvslsvkysF 541
                     +r ++s++l+    +++++++gy +f++++ +   +  ++++ +++kysF
  WP_014709752.1 390 NRLSASYSLN----DDIELTVGYDYFHANKGKfAMYGKNSEAWVKMKYSF 435
                     4445555555....899*********999988899999**********99 PP



Or compare WP_014709752.1 to CDD or PaperBLAST