PaperBLAST – Find papers about a protein or its homologs

 

Align WP_041640081.1 to TIGR00110

WP_041640081.1 has 611 amino acids

Query:       TIGR00110  [M=543]
Accession:   TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-269  879.9   4.6   3.6e-269  879.7   4.6    1.0  1  WP_041640081.1  


Domain annotation for each sequence (and alignments):
>> WP_041640081.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  879.7   4.6  3.6e-269  3.6e-269       2     542 ..      18     607 ..      17     608 .. 0.99

  Alignments for each domain:
  == domain 1  score: 879.7 bits;  conditional E-value: 3.6e-269
       TIGR00110   2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkaha 96 
                     ar+l++atG+k+ d++kPiiavvns+t++vPghvhl+d++++v ++ieaaGgvakefntiav+DGiamgh+Gm+ysLpsr++iaDsve++v+ah+
  WP_041640081.1  18 ARSLWRATGMKEGDFGKPIIAVVNSFTQFVPGHVHLHDIGQMVVKQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHC 112
                     69********************************************************************************************* PP

       TIGR00110  97 lDalvvissCDkivPGmlmaalrlniPaivvsGGpmeagktklsekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansmacl 191
                     +Da+v+is+CDki+PGmlmaa+rlniP+i+vsGGpmeagktkls++++++d+++a+++ a++++s++++++iersacPt+gsCsG+ftansm+cl
  WP_041640081.1 113 ADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLIKLDLIDAMIQSADKNVSDSDVDAIERSACPTCGSCSGMFTANSMNCL 207
                     *********************************************************************************************** PP

       TIGR00110 192 tealGlslPgsstllatsaekkelakksgkrivelvkknik.......PrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfd 279
                     tealGlslPg++++lat+a++k+l+  ++++ivel+k++++       Pr+i+tk+afena++ld+a+GGstntvLhlla+a+ea+v++++ d+d
  WP_041640081.1 208 TEALGLSLPGNGSCLATHADRKQLFLDAATQIVELCKRHYEqddysvlPRSIATKAAFENAMSLDIAMGGSTNTVLHLLAVAQEAEVDFTMADID 302
                     *********************************************************************************************** PP

       TIGR00110 280 rlsrkvPllaklkPsgkkv.iedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlr............................. 344
                     rlsr vP+l+k++P+++k+ +ed+hraGGv+a+l+eld+++llh+d++tv+G t+ae+l+k++++                              
  WP_041640081.1 303 RLSRIVPCLSKVAPNTNKYhMEDVHRAGGVMAILGELDRANLLHHDTKTVLGLTFAEQLAKYDIKLtrdeavktfyrsgpagirtteafsqdcrw 397
                     ******************99********************************************999**************************** PP

       TIGR00110 345 ......vdqdvirsldnpvkkegglavLkGnlaeeGavvkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmrem 433
                            ++ +ir + ++++++ggla+L Gn+a +G++vk+agv+e+ilkf+G+a vfes+e+a+++ilggkvk+G+vvviryeGPkGgPGm+em
  WP_041640081.1 398 etldddRENGCIRDKAHAYSQDGGLAMLSGNIALDGCIVKTAGVDESILKFTGEAIVFESQEDAVDGILGGKVKAGHVVVIRYEGPKGGPGMQEM 492
                     **77555555************************************************************************************* PP

       TIGR00110 434 LaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDkikiDienrkldlevseeelaerrakakkkea......revk 522
                     L+Pts+l+++GLgk++aL+tDGrfsGgt+GlsiGh sPeaa+gG+i+lv++GD+i+iDi+nr ++l+vs+eela+rra+++ k++      rev+
  WP_041640081.1 493 LYPTSYLKSMGLGKACALLTDGRFSGGTSGLSIGHCSPEAASGGTIGLVRNGDIIAIDIPNRSIQLQVSDEELATRRAEQDVKGWkpanraREVS 587
                     ************************************************************************************999**99**** PP

       TIGR00110 523 gaLakyaklvssadkGavld 542
                     +aL+ ++++++sadkGav+d
  WP_041640081.1 588 FALKVFGHFATSADKGAVRD 607
                     ******************98 PP



Or compare WP_041640081.1 to CDD or PaperBLAST