PaperBLAST – Find papers about a protein or its homologs

 

Align WP_044105935.1 to PF02965 (Met_synt_B12)

WP_044105935.1 has 1192 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.22
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-38  118.7   0.0    2.6e-38  118.1   0.0    1.3  1  WP_044105935.1  


Domain annotation for each sequence (and alignments):
>> WP_044105935.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.0   2.6e-38   2.6e-38      18     256 ..     951    1191 ..     933    1192 .] 0.83

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 2.6e-38
    Met_synt_B12   18 welkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpansvgddievyadesrse.....elatlhtLrqqaekeegepn 105 
                      w+++   ++  ++e ++   kk++   ++  +kii+e+ll+    +g fp++s+g+++ vy+ e  ++      ++  ++   +  ++++   
  WP_044105935.1  951 WQFRKP-KEQSREEYHQFLVKKVYPILEDWKQKIITENLLHPTVTYGYFPCQSEGNQLLVYDPEIIQNldgkiPKNLEPIWIIEFPRQKSGRR 1042
                      555544.22333333444566777777777889****************************66664443333322222333344555567889 PP

    Met_synt_B12  106 lclaDfvapkesgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgyakdeklsneelikekYqGi 198 
                      lc+aDf +pke g +D++ + avt+g  ++e+a+++ a++D  + + ++ +a   aeA+ae++h+k+r+e  g+ ++e  +++e+++++YqG 
  WP_044105935.1 1043 LCIADFFTPKELGLTDVFPMQAVTVGEIATEYAQKLFADNDYTNYLYFHGMAVQTAEALAECIHSKIRRE-LGFGQKEPDNIREMLQQHYQGS 1134
                      ***************************************99999999**********************9.69******************** PP

    Met_synt_B12  199 RpApGYpacpdhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFa 256 
                      R+++GYpacp+ +++ +  e+l +++ i++ + es  m+P++s  +++  hp ++yF+
  WP_044105935.1 1135 RYSFGYPACPNIQNQYKQLEVLGCNR-INMYMDESEQMYPEQSTTAIITYHPVANYFS 1191
                      *************************9.******************************7 PP



Or compare WP_044105935.1 to CDD or PaperBLAST