PaperBLAST – Find papers about a protein or its homologs

 

Align WP_154810143.1 to PF14574 (RACo_C_ter)

WP_154810143.1 has 540 amino acids

Query:       RACo_C_ter  [M=261]
Accession:   PF14574.10
Description: C-terminal domain of RACo the ASKHA domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-69  220.0   4.7    7.2e-69  217.8   4.6    2.1  2  WP_154810143.1  


Domain annotation for each sequence (and alignments):
>> WP_154810143.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.042     0.042     149     172 ..      63      86 ..      54      88 .. 0.73
   2 !  217.8   4.6   7.2e-69   7.2e-69       1     260 [.     169     428 ..     169     429 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.042
      RACo_C_ter 149 agvktLleevglevedidkvylaG 172
                      +vk ++e++g++ e+++++ + G
  WP_154810143.1  63 NAVKHIIETLGVKPEELERMSICG 86 
                     567778888888888888888877 PP

  == domain 2  score: 217.8 bits;  conditional E-value: 7.2e-69
      RACo_C_ter   1 eislliDiGTNaEivlgnkdwllaasaaaGPAlEGgeikcGmrAapgAierveidpet.....levelkvignek...............pkGic 75 
                     e+++ +D+GTNaE++l ++  ++++saaaGPAlEG++ik+G  A+p +i++ve++ ++     l+ e+++++ +                +kGi+
  WP_154810143.1 169 ETAIATDYGTNAEMALIHEGTIYTGSAAAGPALEGQQIKYGNLASPFVISDVEFEGKNirnyvLDEEMNTVKAQLinpnngdiieedsikAKGIT 263
                     67899*************************************************999977777777777775555778888888888888***** PP

      RACo_C_ter  76 GsGiidliaelleagiidkkgklnkelkserireeeeteeyvlvlaeesetekdivitekDidelirakaAiyagvktLleevglevedidkvyl 170
                     G+G+i++i++ +e gii+   k+             +t++++l+l++      +i + ekD++++  a++Ai+ag+  L++++g+ev d++k y+
  WP_154810143.1 264 GTGVIAIIQAGMEDGIITLP-KI-------------NTPDHILYLQD------KIKFFEKDVEAAGLAMGAIRAGHLALCNAAGIEVADVKKAYM 338
                     *****************775.77.............57899999997......8***************************************** PP

      RACo_C_ter 171 aGafGsyidlekAitiGllPdlelekvkqvGNtslagAraallsreareeleeiarki..tyielavekkFmeefvaalflphtdlelfpsv 260
                     +Ga G+y+d+ kA+++G++P  ++++v q+GNtsl +Ar++lls+++++el+eia+ki  +++++a++++F+e ++++++++ +++ +f+++
  WP_154810143.1 339 SGAAGTYMDAVKAHQVGMVPF-NVDEVIQIGNTSLIVAREILLSEDRLWELQEIASKIvsNHVMFATDPAFKEAYIQEISYWGEGM-PFKML 428
                     ********************9.**************************************************************99.89876 PP



Or compare WP_154810143.1 to CDD or PaperBLAST