PaperBLAST – Find papers about a protein or its homologs

 

Align WP_232487027.1 to PF02965 (Met_synt_B12)

WP_232487027.1 has 1211 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.22
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-130  419.5   0.0     5e-130  418.9   0.0    1.3  1  WP_232487027.1  


Domain annotation for each sequence (and alignments):
>> WP_232487027.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.9   0.0    5e-130    5e-130       2     273 .]     922    1192 ..     921    1192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 418.9 bits;  conditional E-value: 5e-130
    Met_synt_B12    2 leelveyidWtpffqawelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpansvgddievyadesrseelatlhtLr 94  
                      +e+l++yidWtpff++w+l+gkyp+ilede+vgeeak+lf+dA+amL+++ ++  l+ ++vvglfpansvgdd+++y+de+r+++l + h+Lr
  WP_232487027.1  922 IETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGEEAKRLFADANAMLDDLSTRGALNPRGVVGLFPANSVGDDVVIYTDERRETVLSVSHHLR 1014
                      899****************************************************************************************** PP

    Met_synt_B12   95 qqaekeegepnlclaDfvapkesgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgyakdeklsn 187 
                      qq+ek ++ pn++l+Dfvapk+ g+ Dy+G+favt gl+ ++la+++ea++DdY++i+vka++DrLaeAfae+lhe+vrk +Wgya++e+lsn
  WP_232487027.1 1015 QQTEK-TDFPNYSLSDFVAPKSGGKPDYLGAFAVTGGLEEDTLADQWEAQHDDYNKIMVKAISDRLAEAFAEYLHERVRKVYWGYAPNENLSN 1106
                      **998.699************************************************************************************ PP

    Met_synt_B12  188 eelikekYqGiRpApGYpacpdhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFavgkiekdqvedyakrkg 273 
                      e li+e+YqGiRpApGYpacpdh+ek  +++lld+e+++g++Ltes+am+P asvsG+yf+hp+skyFav++i++dqv+dya rkg
  WP_232487027.1 1107 ELLIRENYQGIRPAPGYPACPDHTEKVPIWQLLDVEKHTGMKLTESYAMWPGASVSGWYFSHPDSKYFAVAQIQHDQVKDYAVRKG 1192
                      ************************************************************************************97 PP



Or compare WP_232487027.1 to CDD or PaperBLAST