PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001584707.1 to PF01817 (CM_2)

XP_001584707.1 has 160 amino acids

Query:       CM_2  [M=79]
Accession:   PF01817.25
Description: Chorismate mutase type II
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-20   57.8   0.0    7.3e-20   57.5   0.0    1.1  1  XP_001584707.1  


Domain annotation for each sequence (and alignments):
>> XP_001584707.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   7.3e-20   7.3e-20       1      78 [.      74     152 ..      74     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 7.3e-20
            CM_2   1 RkeIdeiDrelleLlaeRmelakeiaeyKkenglpvldpeReeevlerlregaeel..gldpeavekifreiisesralQ 78 
                     R+ I++i+++l++Lla+R+++++e+ ++K++ g +v  p+R +ev++ + + a++   +l++e+++ +f++ii+es+ ++
  XP_001584707.1  74 RAGINDINAQLVDLLAQRAAYVREATRFKATLG-DVNVPSRNQEVIDGAVALANQTvpRLPEEIARGVFEAIINESVPFE 152
                     899**************************8777.9****************7766667******************9877 PP



Or compare XP_001584707.1 to CDD or PaperBLAST