PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001894628.1 to PF05608 (RTE1)

XP_001894628.1 has 178 amino acids

Query:       RTE1  [M=149]
Accession:   PF05608.18
Description: RTE1-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-50  156.0   8.1    1.5e-47  147.6   8.1    2.1  1  XP_001894628.1  


Domain annotation for each sequence (and alignments):
>> XP_001894628.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   8.1   1.5e-47   1.5e-47       2     149 .]      18     146 ..      17     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 1.5e-47
            RTE1   2 pkrerfPccivwtplPvvswllPfiGHvGicredGvildFagpnfvsvdnlafgavarylqldkekvslasnlseakseeeekeeesetaitwdd 96 
                     p r+rfPcc+vwtp+Pv++wl+Pf+GH+Gi+++ G+i+dFag+++vs+dn+afg+++ y q+d +++                    +++ +wd+
  XP_001894628.1  18 PMRHRFPCCVVWTPIPVLTWLFPFVGHMGIATSRGIIRDFAGSYCVSEDNMAFGWPTWYHQIDPNTIDG------------------GVE-AWDR 93 
                     6799************************************************************99876..................444.8*** PP

            RTE1  97 alekateefqhrsynlftcnchsfvanalnrlkykgskkwnvvnlallillkg 149
                     a+ +a+ee++ + + lf++nc+++va aln++k+ +++++n ++l+ ++++kg
  XP_001894628.1  94 AVLDASEEYKGHVHTLFFDNCYCHVALALNKMKFGHKRDYNCFRLVNMLMFKG 146
                     **************************************************998 PP



Or compare XP_001894628.1 to CDD or PaperBLAST