PaperBLAST – Find papers about a protein or its homologs

 

Align XP_007417923.1 to PF13430 (DUF4112)

XP_007417923.1 has 274 amino acids

Query:       DUF4112  [M=105]
Accession:   PF13430.10
Description: Domain of unknown function (DUF4112)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  111.3   0.2    1.9e-36  110.8   0.2    1.2  1  XP_007417923.1  


Domain annotation for each sequence (and alignments):
>> XP_007417923.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.2   1.9e-36   1.9e-36       2     105 .]      58     159 ..      57     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.9e-36
         DUF4112   2 lkkvrklayllDkafripgtgvrfGldpiigliPvvGdvisaals.lylvreakkreglpkslllrmllniaiDfliglvPvvGdlfdalfkant 95 
                     l+kvrk+a++lDk f  +++g+rfG+++iigliPv+Gdv++a ls ++++r a ++ +lp  l+ rmlln a+++ iglvP++Gd++ a++k n+
  XP_007417923.1  58 LRKVRKRAHRLDKGF--SLCGFRFGWTAIIGLIPVLGDVVDASLSyFLVIRPA-RKCDLPMLLVERMLLNQAVSTSIGLVPFAGDILMAVWKVNS 149
                     89***********88..89**************************55666666.6666************************************* PP

         DUF4112  96 rNaallekhl 105
                     rNaalle++l
  XP_007417923.1 150 RNAALLEDFL 159
                     *******987 PP



Or compare XP_007417923.1 to CDD or PaperBLAST