PaperBLAST – Find papers about a protein or its homologs

 

Align XP_010025309.1 to PF03478 (DUF295)

XP_010025309.1 has 471 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-12   31.2   0.1    1.4e-11   30.6   0.1    1.3  1  XP_010025309.1  


Domain annotation for each sequence (and alignments):
>> XP_010025309.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   1.4e-11   1.4e-11       2     218 ..     173     397 ..     172     425 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.4e-11
          DUF295   2 Pwlllpddeeedsstlfslpdgklyr.rl.klPeg.rrrcvgssggwLltaderssnlfllnpltgarieLPplstlpveellirkvvlsas.ps 92 
                     Pw    ++e+ +s ++++ + +k ++ ++ +lP++     v+s gg +++ d +++n++++nplt++  eLP+ s ++v++ +   + l  s  +
  XP_010025309.1 173 PWFYTITHENVNSGVMYDPSLKKWHHpTIsSLPANiIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSSKELPARS-IKVWSRIAVGMTLNGSsAT 266
                     7777555555566679**87799999844489*99955689***********88899***************764.3333323344446333246 PP

          DUF295  93 sdyvvvlisgesggklafcrsgdssWttieee.........gegy.edvvfhkgkfYaltntg.evvvldl.gsdeplevsevvks........k 167
                     + y  +++  +  g+  ++ s ++sW +  ++           ++ +++v  +  +Y+++++   +v +++ +        +++k+         
  XP_010025309.1 267 GGYKIMWVGCK--GEYEIYDSVKNSWLRPGTMppniklplsL-NFkSQAVSIDDTLYFMRSDPeGIVSYNMvT--------RIWKQfiipaplhL 350
                     9*******985..58888999999998865559999999953.563688888******999662566666542........22222222345532 PP

          DUF295 168 erkylVessGelllVrrylkkeskrtvefeVykldleeeakweevesLgdr 218
                     +++ l+e+ G+ +lV   +k++    + +e+ k+ l     w+ev+ + ++
  XP_010025309.1 351 TDRTLAECGGRIMLVGLLTKNAATCVCIWELQKMTL----LWKEVDRMPNE 397
                     3889***********977676555566666666655....48888877544 PP



Or compare XP_010025309.1 to CDD or PaperBLAST