PaperBLAST – Find papers about a protein or its homologs

 

Align XP_010762586.1 to TIGR00110

XP_010762586.1 has 610 amino acids

Query:       TIGR00110  [M=543]
Accession:   TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.7e-222  723.7   3.8   7.7e-222  723.5   3.8    1.0  1  XP_010762586.1  


Domain annotation for each sequence (and alignments):
>> XP_010762586.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  723.5   3.8  7.7e-222  7.7e-222       2     542 ..      58     608 ..      57     609 .. 0.98

  Alignments for each domain:
  == domain 1  score: 723.5 bits;  conditional E-value: 7.7e-222
       TIGR00110   2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkaha 96 
                     ++a+l+atGl+ ed++k ++++++ + + +P+++hl dl+++v+e++++aG v ++fnti+vsDGi+mg++Gm+ysL+sr++iaDs+etv+ +++
  XP_010762586.1  58 SQAMLYATGLTLEDMSKAQVGISSVWYNGNPCNMHLLDLGNRVREGVQKAGLVGFQFNTIGVSDGISMGTKGMRYSLQSRDLIADSIETVMGGQW 152
                     79********************************************************************************************* PP

       TIGR00110  97 lDalvvissCDkivPGmlmaalrlniPaivvsGGpmeagktkl..sekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansma 189
                     +Da++ i+ CDk++PG++ma+ r+n+P+++v+GG++++g   +    +id+v++f+a+g+   g+++e+++++i r+acP+ g+C+G++tan+ma
  XP_010762586.1 153 YDANISIPGCDKNMPGVVMAMGRVNRPSLMVYGGTIKPGCAVTqnNADIDIVSAFQAYGQFLTGEITEAQRYDIIRHACPGGGACGGMYTANTMA 247
                     **************************************9755423789*********************************************** PP

       TIGR00110 190 cltealGlslPgsstllatsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrlsrk 284
                     ++ ea+G++lPgss+ +a s+ k   +  +g+ i++l+k++i+P dilt++afena++++ ++GGstn+vLhl+aia+++g+kl++ddf+ +s++
  XP_010762586.1 248 SAIEAMGMTLPGSSSNPAESKAKVIECLAAGEAIKNLLKEDIRPCDILTRQAFENAMVVVNITGGSTNAVLHLIAIADSVGIKLTIDDFQSVSDR 342
                     *********************************************************************************************** PP

       TIGR00110 285 vPllaklkPsgkkviedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlrvdqdvirsldnpvkkegglavLkGnlaeeGavvki 379
                     +P la+lkPsgk+v++dl + GG++++lk l +egl++   +tvtG+tla+++ek++  ++dq++ir+l+np+kk+g++++L+Gnla+eG+v ki
  XP_010762586.1 343 IPFLADLKPSGKYVMADLYAIGGTPSLLKFLLREGLIDGSGMTVTGQTLAKNIEKTPDFPADQKIIRPLNNPIKKTGHIQILRGNLAPEGSVGKI 437
                     *********************************************************************************************** PP

       TIGR00110 380 agveedilkfeGpakvfeseeealeailggkvkeGd..vvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPe 472
                     +g+e   +kf G+akv++ e+++++++ + ++   +  vvviry GPkGgPGm+emL+P+sal+g+GLg++vaLitDGrfsGg++G++iGhv+Pe
  XP_010762586.1 438 TGKEG--TKFVGKAKVYDHEDDFVASLERNEIPMDEktVVVIRYAGPKGGPGMPEMLKPSSALMGAGLGSSVALITDGRFSGGSHGFLIGHVVPE 530
                     *****..************************9655555********************************************************* PP

       TIGR00110 473 aaegGaialvedGDkikiDienrkldlevseeelaerrakakkkea........revkgaLakyaklvssadkGavld 542
                     aa+gG+ialve+GD+i+iD+enr l+l+vsee l +rr k+ ++e           ++g+L kya+ v+ a++G+++d
  XP_010762586.1 531 AAVGGPIALVENGDIITIDAENRWLNLDVSEEILTQRRMKWLEQESqglnppsgLAMRGTLGKYARNVKDASHGCITD 608
                     *****************************************9999989999999889*******************87 PP



Or compare XP_010762586.1 to CDD or PaperBLAST