PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011390774.1 to PF15249 (GLTSCR1)

XP_011390774.1 has 946 amino acids

Query:       GLTSCR1  [M=102]
Accession:   PF15249.10
Description: Conserved region of unknown function on GLTSCR protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-12   32.4   0.1    5.5e-12   32.4   0.1    2.3  3  XP_011390774.1  


Domain annotation for each sequence (and alignments):
>> XP_011390774.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   5.5e-12   5.5e-12       1      54 [.     164     214 ..     164     252 .. 0.74
   2 ?   -1.5   0.1       0.2       0.2      51      78 ..     287     314 ..     284     343 .. 0.67
   3 ?   -2.6   0.8      0.43      0.43      50      50 ..     384     384 ..     329     415 .. 0.54

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.5e-12
         GLTSCR1   1 dqkavlnPdvktpFasleDAvkRLlPYHvfqepkedeedlekadeefekvatel 54 
                     d+ka+l+Pd++  F +++D+++RLlPYHv++ p  d+ +    d ++  v +++
  XP_011390774.1 164 DHKAILRPDLS-AFIDARDVLRRLLPYHVWNIPHHDLLKAL--DLKEDPVLSQV 214
                     9********96.*********************99986555..44444444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.2
         GLTSCR1  51 atellkrfqkllnkyrrlllreskresp 78 
                      + +++r+++l  ++r++l   ++ + +
  XP_011390774.1 287 TESVFARRNALALRFRKTLTALDTTHKR 314
                     5678899999999999998876664433 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.43
         GLTSCR1  50 v 50 
                     +
  XP_011390774.1 384 E 384
                     2 PP



Or compare XP_011390774.1 to CDD or PaperBLAST