PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011392537.1 to PF17168 (DUF5127)

XP_011392537.1 has 912 amino acids

Query:       DUF5127  [M=227]
Accession:   PF17168.8
Description: Domain of unknown function (DUF5127)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-54  171.4   2.2    1.3e-54  171.4   2.2    1.6  2  XP_011392537.1  


Domain annotation for each sequence (and alignments):
>> XP_011392537.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   2.2   1.3e-54   1.3e-54       1     227 []     243     482 ..     243     482 .. 0.90
   2 ?   -3.7   0.0      0.46      0.46     146     161 ..     706     721 ..     691     729 .. 0.67

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 1.3e-54
         DUF5127   1 TqtiftftaggkveltvtFlsPvlpddldrqSlpfsYltvevkstdgkshdVqvYsdisaewasgdrsqevtwstt...t..gglayhkvgtqdq 90 
                     T+tif f+a+ kv+++vtFl+P++pdd+ rqSlp+sYl+ve+  +  k  ++q+Y+di+++w++g++    ++ ++      ++++++ v+++++
  XP_011392537.1 243 TRTIFAFEAD-KVRFNVTFLTPITPDDYLRQSLPLSYLHVELDPSTIKGRSIQLYTDIDERWVTGHDYDYEEYPYDqqyYdkNNTSVFFVTRKQP 336
                     9*********.6****************************************************9986655554433263646************ PP

         DUF5127  91 avlsekndradwGsaylatkasss.ltyqsgsdtdvrsqFvkngklantkdtnfraisddwpvfafahdlgsvssesasvvfaiGyvrdpaiqyl 184
                     ++++e ++ra+wG+a +a++ ++  l  +  ++  + s+F+++gkl+     +  ++    + fafa+d+    + ++ ++f+iG++r+p+++y+
  XP_011392537.1 337 RIYTEFRQRAEWGNATYAAR-KHPgLYSRNNNNVVTHSEFINTGKLSF----DHGPVLGPDNSFAFAVDFDVKHA-DKDALFVIGHMRTPYVNYI 425
                     ********************.8788999999***************33....34557899999*******66555.599**************** PP

         DUF5127 185 g.............qnlrpywrskyss.iedalsaflkdyeaalarsealDkkirsd 227
                                   +++ +yw++k+ +  +da+++f++d+++ala+++++D+++ +d
  XP_011392537.1 426 RakhpgtnstksyqEDRYGYWQTKFGDkLDDAVAFFVNDFDSALAKAKKFDRQVLQD 482
                     888999999999*9*******999987699***********************9886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.46
         DUF5127 146 isddwpvfafahdlgs 161
                       ++w+ fa++hd   
  XP_011392537.1 706 YIKNWQEFAISHDASH 721
                     3368999999999765 PP



Or compare XP_011392537.1 to CDD or PaperBLAST