XP_011509960.1 has 2736 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-37 114.7 4.2 2.6e-37 114.7 4.2 3.5 3 XP_011509960.1
Domain annotation for each sequence (and alignments):
>> XP_011509960.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.2 0.4 0.29 0.29 299 357 .. 66 124 .. 62 150 .. 0.63
2 ? -1.7 0.1 0.053 0.053 348 436 .. 239 324 .. 231 349 .. 0.66
3 ! 114.7 4.2 2.6e-37 2.6e-37 18 320 .. 888 1202 .. 883 1320 .. 0.81
Alignments for each domain:
== domain 1 score: -4.2 bits; conditional E-value: 0.29
DUF4704 299 aiRllaLkllgklllrspvkrksevmeaknlfsliserLllfseeltdktynvLfevll 357
+ R++ L+++ k+ + +++ ++ + f+++ ++L+ +e t + n+ + +
XP_011509960.1 66 VLRIQLLQCVQKMADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINYVITMTT 124
56888888888888888877777777777777777777777775555555555544444 PP
== domain 2 score: -1.7 bits; conditional E-value: 0.053
DUF4704 348 tynvLfevllekaspkivlekhsepekssklelPqilkviakllsqskdsesielrkkiLsdllvLlksnrenrrallqmsvWqewLva 436
t +vL+ vl ++ s + + e+ +++l l + +v+ lls+ +d ++e +iL++ Ll+s +++ + +W++ ++a
XP_011509960.1 239 TMEVLMRVLADCDSWEDGDPE--EVGRKAELTLKCLTEVVHILLSSNSDQRQVE-TSTILENYFKLLNSDHSALPNQRRSRQWENRFIA 324
555555555555554433333..3333344444466677777777777755544.4578999999999999988877777777777766 PP
== domain 3 score: 114.7 bits; conditional E-value: 2.6e-37
DUF4704 18 vvthsiqsilesvGGiqvLfPLfsqldqaeedeqlege..........................seadeklcatlleliaelleesetnqqql 84
vv +i++i++++GG +vLfPL++q+ + +e + e++ s + +l+at + ++++ ++ ++ nq +l
XP_011509960.1 888 VVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQIPEEKnestvpesvtpvegdwlvwtstkaseSRLERNLVATFILIVKHFIQRHPINQGNL 980
78889***********************99987555557789*******************9999999************************* PP
DUF4704 85 lrlkGflvlsflLqsvspkhLtlevlsalksllkvlkslanselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvs 177
++++G++ l+ lLq+v+++ + ++vl a++ l++++ sl ++ +Ll+++ +++l+++++W + d+ +yL+t++ ++ ++ r+
XP_011509960.1 981 IHSHGVATLGALLQKVPSTLMDVNVLMAVQLLIEQV-SLEKNMQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRV---FRKKY 1069
***********************************9.6668***************************************99866...89999 PP
DUF4704 178 tVlrlldilkqfYwvenaksksgvtskslleeRpsqeeilklrallLslieqlvrksseisesevkalinyletvqddenvedvLelvirlls 270
+V+ lld+l+ +Y ++ s ++i ++r l li+ + k+ s +e+++++ y++ ++++e++ +L+ + +ll
XP_011509960.1 1070 GVQFLLDTLRIYYGNGC-----KYN-------ELSLDDIRTIRTSLYGLIKYFLCKG--GSHEEIQSIMGYIAATNEEEQLFGILDVLFSLLR 1148
999**********8652.....222.......33678********************..99******************************** PP
DUF4704 271 eks...asflealdskggieiflkLLsre..seaiRllaLkllgklllrspvkrk 320
++ + fl ++ g +i+ LL ++ s R + k++ ++l+ v
XP_011509960.1 1149 TSPtrgQLFLLLFEP-GNADILYALLLNQkySDRLREIIFKIMEQMLKCTNVYER 1202
*99895666666655.556777777755411566677788999888875554332 PP
Or compare XP_011509960.1 to CDD or PaperBLAST