PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011533750.1 to PF04402 (SIMPL)

XP_011533750.1 has 157 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.19
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-16   46.5   1.2    3.3e-16   46.2   1.2    1.1  1  XP_011533750.1  


Domain annotation for each sequence (and alignments):
>> XP_011533750.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   1.2   3.3e-16   3.3e-16       1      65 [.      53     118 ..      53     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 3.3e-16
           SIMPL   1 itVtGeaevevapDlatvslgvetegkdaaeaqaevaervnavlaaLkaaagieekdiqtsg..lsv 65 
                     ++V+G++ev++ pD+a+v + v+++++ aaea+++v +r+++++++L+ ++g+++++i+ +    +v
  XP_011533750.1  53 VQVSGTSEVSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQ-QQGVQAENITVTKdfRRV 118
                     79**********************************************.66**99988544433333 PP



Or compare XP_011533750.1 to CDD or PaperBLAST