PaperBLAST – Find papers about a protein or its homologs

 

Align XP_012050648.1 to PF08508 (DUF1746)

XP_012050648.1 has 346 amino acids

Query:       DUF1746  [M=116]
Accession:   PF08508.14
Description: Fungal domain of unknown function (DUF1746)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-11   30.4   0.7      4e-11   29.6   0.7    1.4  1  XP_012050648.1  


Domain annotation for each sequence (and alignments):
>> XP_012050648.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.7     4e-11     4e-11       6     115 ..      18     119 ..      13     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4e-11
         DUF1746   6 vyvllvilYymDcsllrlllRaivqlsfltpkpesftellpaekpllvaillsnllclllhllfslpsageatrgylhggliidFiGqkaptsrl 100
                       +l  ++Y+   sll l+ R+++++++  +   +++++l+    l +++ l+n++  +lh+l s p  g    g   gg+++dF+G + p++  
  XP_012050648.1  18 AQILAYLQYLHSPSLLILIARLLTHIQIQVISLIPPSRSLQ---NLALMLTLINIVAGILHWLDSGPGGG----GGGGGGMVLDFVGTR-PFGLA 104
                     55566789*******************99999887766644...788889999*************9999....8889*********97.77888 PP

         DUF1746 101 ellllDllilllqll 115
                      + +lD++i+ ++ll
  XP_012050648.1 105 WVWVLDVVIWGIHLL 119
                     8999*******9986 PP



Or compare XP_012050648.1 to CDD or PaperBLAST