PaperBLAST – Find papers about a protein or its homologs

 

Align XP_015634760.1 to PF03478 (DUF295)

XP_015634760.1 has 459 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-30   92.9   0.0    1.9e-30   92.4   0.0    1.1  1  XP_015634760.1  


Domain annotation for each sequence (and alignments):
>> XP_015634760.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   1.9e-30   1.9e-30       3     246 ..     131     416 ..     129     432 .. 0.77

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 1.9e-30
          DUF295   3 wlllpddee.........edsstlfslpd.gklyrrlklPeg.rrrcvgssg.gwLltaderssnlfllnpltgarieLPplstlp.ve...... 78 
                     w++l ++++         ++++ ++++++ g+++++ ++Pe  ++++++ +  g Ll+ +e s +l+llnplt+ r++LPp+++l   e      
  XP_015634760.1 131 WIMLDKAHHnkgttaaatHRRHRFLNVSTgGCIHTD-DIPELaDHTMLALTPeGLLLLLHEPSLRLHLLNPLTRHRTDLPPVTALLtPEwrrras 224
                     88877777777766555444444***9998888876.89***95566665555999988887789*****************8765334899999 PP

          DUF295  79 ..........ellirkvvlsaspssdyvvvlisgesggklafcrsgdssWttieeegegyedvvfhkgkfYaltntgevvvldl....gsdeple 159
                                +    +v+  + +s +v+v +s  +    a++++gd+sWt+i+ +   +     +  +fY  t +  ++ ld+     +++p +
  XP_015634760.1 225 wrlgahgvglRVNAAGFVV--EDASTVVAVDFS--DPTVRAIAKPGDESWTVIDDR---LNTTLPFVSRFYRATDR-GIMELDIasddRRKPPPQ 311
                     9998888855434444455..333444444444..45699*************955...456677789***76655.599999987764445555 PP

          DUF295 160 vs.....evvks....kerkylVessGelllVrrylkk..........eskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdf 235
                     ++     ++++s    +++ +lV+  Gel+lV+r+l            ++kr +++e +++d++ ++  + v+ ++ ralF++  +++svsa+ +
  XP_015634760.1 312 MRmaiesSLIHSsralQSTLHLVDNGGELILVQRMLWPdhyahddgsyRTKRSRKYEAWRVDFD-AGILVPVKGFNWRALFISMSRAISVSAETL 405
                     55655554444477765589**************99999*********99999**********9.6789************************** PP

          DUF295 236 pglkgNcIYft 246
                     p + +++IYf 
  XP_015634760.1 406 PFVAADTIYFG 416
                     **********5 PP



Or compare XP_015634760.1 to CDD or PaperBLAST