PaperBLAST – Find papers about a protein or its homologs

 

Align XP_015895121.3 to PF05078 (DUF679)

XP_015895121.3 has 220 amino acids

Query:       DUF679  [M=163]
Accession:   PF05078.16
Description: Protein of unknown function (DUF679)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-70  220.5   2.5    7.3e-70  220.3   2.5    1.1  1  XP_015895121.3  


Domain annotation for each sequence (and alignments):
>> XP_015895121.3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   2.5   7.3e-70   7.3e-70       2     163 .]      56     217 ..      55     217 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 7.3e-70
          DUF679   2 stanLaklLPtgtvlaFqlLspvltnkGeCekvnklltaaLlalcalscfllsfTDsfkgedgkvyyglatlkglwvfdaekekekeelskyrlr 96 
                     +t++L+++LPtgt+l+F++L p+++ +G+C+ v++l+++aLl lc+lscf+++fTDsfkg dgkvyyg++t+kgl+vf++   +e  ++++y++ 
  XP_015895121.3  56 KTSMLVNFLPTGTLLTFEMLLPSVSGDGQCSPVSTLMIHALLGLCTLSCFFFHFTDSFKGPDGKVYYGFVTPKGLAVFRSGLGVEVPKDERYKVG 150
                     799******************************************************************************************** PP

          DUF679  97 flDfvhAvlsvlvFlavalldknvvkCffpkaeeetkellkalPlvvgvlasllfvvfPtkRhgiGy 163
                     f+DfvhAv+sv+vF+ava++d++v++C+fp + ++++e++++lPl+vg+++s lf+vfP++R giG+
  XP_015895121.3 151 FTDFVHAVMSVMVFTAVAFSDNRVTDCLFPGHVRDMDEVMESLPLMVGIICSGLFLVFPNTRYGIGC 217
                     ******************************************************************7 PP



Or compare XP_015895121.3 to CDD or PaperBLAST