PaperBLAST – Find papers about a protein or its homologs

 

Align XP_019091968.1 to PF03478 (DUF295)

XP_019091968.1 has 395 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-11   28.6   0.1    1.1e-10   27.6   0.1    1.4  1  XP_019091968.1  


Domain annotation for each sequence (and alignments):
>> XP_019091968.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   1.1e-10   1.1e-10       2     215 ..      95     316 ..      94     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.1e-10
          DUF295   2 Pwlllpddeeedsstlfslpdgklyr...rlklPeg.rrrcvgssggwLltaderssnlfllnpltgarieLPplstlpveellirkvvlsasps 92 
                     Pw    ++e+ +s  +++ + +k ++     +lP++     ++s gg +++ d +++n+++ nplt++  eLP+ s ++v++ +   + l  + +
  XP_019091968.1  95 PWFYTITHENVNSGQVYDPSLKKWHHpviP-ALPKKsIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFRELPARS-FKVWSRVAVGMTLNGNST 187
                     8888555444555669**877999996532.677777444789999*******88899***************875.553332333334644444 PP

          DUF295  93 .sdyvvvlisgesggklafcrsgdssWttieee..........gegyedvvfhkgkfYaltntgevvvldl.gsdeplevsevvks.....kerk 170
                      + y v+++  e  g+  ++ s ++ Wt+  +           + + + v++h    ++lt  + +  +d+ +++  +    ++ +     + ++
  XP_019091968.1 188 sHGYKVLWVGCE--GEYEVYDSLSNVWTKRGTIpsniklpvllNFKSQPVAIHSTLYFMLTDPEGILSYDMvSGKWKQ---FII-PgppdlS-DH 275
                     699*****9985..699999999999999765488899999987677889999777778999999*****96423232...233.2354321.44 PP

          DUF295 171 ylVessG.elllVrrylkkeskrtvefeVykldleeeakweevesL 215
                      l+ ++G +l+lV   +k++    + +e+ k+ l     w+ev+ +
  XP_019091968.1 276 TLA-ACGeRLMLVGLLTKNAATCVCIWELQKMTL----LWKEVDRM 316
                     555.566267777755554545555566666654....59999876 PP



Or compare XP_019091968.1 to CDD or PaperBLAST