PaperBLAST – Find papers about a protein or its homologs

 

Align XP_031403475.1 to PF05553 (DUF761)

XP_031403475.1 has 357 amino acids

Query:       DUF761  [M=36]
Accession:   PF05553.15
Description: Cotton fibre expressed protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-20   58.4   8.8    2.1e-20   58.4   8.8    1.7  2  XP_031403475.1  


Domain annotation for each sequence (and alignments):
>> XP_031403475.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.16      0.16       4      10 ..     194     200 ..     193     200 .. 0.88
   2 !   58.4   8.8   2.1e-20   2.1e-20       1      36 []     319     354 ..     319     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.16
          DUF761   4 vDakAEa 10 
                     +++kAE+
  XP_031403475.1 194 LNEKAEE 200
                     79****7 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 2.1e-20
          DUF761   1 deevDakAEaFIakFreqlrLQRqeSikryqemlaR 36 
                     ++e+++++EaFI+kF+e++rLQRqeS+++yqem++R
  XP_031403475.1 319 QDELNRRVEAFIKKFNEEMRLQRQESLNQYQEMIRR 354
                     79********************************98 PP



Or compare XP_031403475.1 to CDD or PaperBLAST