PaperBLAST – Find papers about a protein or its homologs

 

Align XP_039303891.1 to PF06722 (EryCIII-like_C)

XP_039303891.1 has 1041 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.18
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-33   99.4   0.0    3.9e-18   52.0   0.0    2.3  2  XP_039303891.1  


Domain annotation for each sequence (and alignments):
>> XP_039303891.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   6.5e-16   6.5e-16      28     133 ..     334     441 ..     314     445 .. 0.94
   2 !   52.0   0.0   3.9e-18   3.9e-18      28     133 ..     854     961 ..     832     965 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 6.5e-16
                     S--SSEEE--S--HHHHG..GG-SEEEE---HHHHHHHHHTT--EEE---SHHHHHHHHHHHHHTSEEE--TTT--HHHHHHHHHHHHH-HHHHH CS
  EryCIII-like_C  28 slPdnvRlvdfvPlgvlL..ptcaaivhhGGaGstltalhaGvPqivlpdgaDrlvraqrvaelGaGialpkdeldadslaeavarvledpayre 120
                      lP+n+ +  ++P   +L  p+ +a++ hGG   t+ a++ GvP i +p +aD++++ +  ++    i l   +++ +s+ +a++ +l +p yre
  XP_039303891.1 334 GLPENIYMSPWMPQIKILkhPNIKAFITHGGLLGTQEAISCGVPMIGIPLFADQFMNINTYVAKNIAIQLDIYTITEKSMDAALNAILWNPLYRE 428
                     59**************99555899*********************************************************************** PP

                     HHHHHHHHHHTS- CS
  EryCIII-like_C 121 aaaklaeealaeP 133
                     +a +l  + l +P
  XP_039303891.1 429 TARNLSRQFLDRP 441
                     *****99999888 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 3.9e-18
                     S--SSEEE--S--HHHHG..GG-SEEEE---HHHHHHHHHTT--EEE---SHHHHHHHHHHHHHTSEEE--TTT--HHHHHHHHHHHHH-HHHHH CS
  EryCIII-like_C  28 slPdnvRlvdfvPlgvlL..ptcaaivhhGGaGstltalhaGvPqivlpdgaDrlvraqrvaelGaGialpkdeldadslaeavarvledpayre 120
                      lP+n+ +  ++P   +L  p+  a++ hGG   t+ a++ GvP i lp +aD++ + ++ +++   i l +++l+ +s+ +a++ +l+dp yre
  XP_039303891.1 854 GLPENIHVSPWMPQLKILkhPNIRAFITHGGLMGTQEAVSCGVPMIGLPLFADQFTNINAYVARNIAIRLDVKTLTEKSMDAALNAILQDPLYRE 948
                     59***********99999445899*********************************************************************** PP

                     HHHHHHHHHHTS- CS
  EryCIII-like_C 121 aaaklaeealaeP 133
                     +a +l +  l +P
  XP_039303891.1 949 SARNLSQRFLDRP 961
                     *****99998888 PP



Or compare XP_039303891.1 to CDD or PaperBLAST