PaperBLAST – Find papers about a protein or its homologs

 

Align XP_049150569.1 to PF14273 (DUF4360)

XP_049150569.1 has 209 amino acids

Query:       DUF4360  [M=178]
Accession:   PF14273.11
Description: Domain of unknown function (DUF4360)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-37  113.4   0.3    6.5e-37  113.2   0.3    1.0  1  XP_049150569.1  


Domain annotation for each sequence (and alignments):
>> XP_049150569.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.3   6.5e-37   6.5e-37       3     178 .]      36     208 ..      34     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 6.5e-37
         DUF4360   3 itiksvsvsGsGCpqgsasvqvspdntaftvtfddftaqigpgasptdsrknCqlnlnvkvpqGfqfavasadyrGyasldagvtatlkatyyfs 97 
                     + ++++++ G+GCp gs+s +++p ++ f+v+++++++ i+ g ++ +    Cq+++++++ ++ q+ ++s +y+G+++l++g++a+++++y+f+
  XP_049150569.1  36 LAVTGIRYTGEGCPVGSLSGNLDPSGS-FDVLYEALNTTIKAGDHKVK--VKCQIEVDIQTAADRQLVILSGTYKGHVRLTEGAWAKNQNQYKFK 127
                     6799**********************9.**********9998855555..55******************************************* PP

         DUF4360  98 gdseqtststtlsGpls..gdytltdevevsstvwspCGesailnintelrvtsssskasglitvdstdgavtqtlhlkwrkC 178
                     g++ + + +++++ p++   ++t++ ++e++s ++s+ G+  ++ in++l++ ss++ ++g i+ +++dg v+q+ +l+  kC
  XP_049150569.1 128 GSRGTINLEWPFKAPIDaaTEFTNNLSTEFQSGCNSNGGK-FTMIINNYLSM-SSDGPGEGEISITELDGVVKQSTKLATAKC 208
                     ***999*********9965599***************999.89*********.888899************************ PP



Or compare XP_049150569.1 to CDD or PaperBLAST