PaperBLAST – Find papers about a protein or its homologs

 

Align XP_059603976.1 to PF11578 (DUF3237)

XP_059603976.1 has 177 amino acids

Query:       DUF3237  [M=149]
Accession:   PF11578.13
Description: Protein of unknown function (DUF3237)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-46  144.2   0.0    1.5e-46  144.0   0.0    1.0  1  XP_059603976.1  


Domain annotation for each sequence (and alignments):
>> XP_059603976.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0   1.5e-46   1.5e-46       1     149 []       5     174 ..       5     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 1.5e-46
                     --EEEEEEEEEEE..---......EEEEE.ETTEEEEEEEEEEEEEES.....TT--EEE-ST-EEEEEE-T.TS-EEEEEEEEEEETTS.-EEE CS
         DUF3237   1 pklepaftlrvkl..dap......ievge.gpegsrrivpitgGtvkg.....pklkgevlpgGaDwqtvdp.dgtarldaryvlktddG.aliy 79 
                     p+l+paft++v+   ++p      i+ g+ + ++s+++vp+tgGtv++     p+l++e++  G+D++++d+ ++++rlda+ v+k +dG +liy
  XP_059603976.1   5 PTLQPAFTFKVQPpiQNPrvptqlIASGSaSRQNSLQVVPMTGGTVQSapgfsPALDAEFVGVGNDYIHADAdGKHLRLDAHGVIKPKDGdDLIY 99 
                     99*********98664456667666666665569**************************************88889**********99879*** PP

                     EEEEEEEE--GGGHHHHHHT-.---GGG-E.EEEEEEEEESSGGGGGGGSS-EEEEEEEESS.E....EEEEEEEE CS
         DUF3237  80 vrytGvltlppevlavlaggekvdsptdyy.frthprfetgdekykwLnrkvfvGsgrrrve.g....veydvyrv 149
                     ++ytGv+tl pev+av+ag+++ d +t++  ++th++fetg+e+yk+L+++vf+++gr++ve g    vey+v++v
  XP_059603976.1 100 LNYTGVCTLLPEVQAVFAGAAP-DGSTPFNsAFTHITFETGSERYKELENRVFIAQGRFNVEkGkptvVEYRVSQV 174
                     *******************885.55799999*******************************659*********98 PP



Or compare XP_059603976.1 to CDD or PaperBLAST