PaperBLAST – Find papers about a protein or its homologs

 

Align XP_318631.5 to PF11901 (DM9)

XP_318631.5 has 298 amino acids

Query:       DM9  [M=115]
Accession:   PF11901.12
Description: DM9 repeat
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-49  151.5   1.5      2e-45  139.7   0.2    2.5  3  XP_318631.5  


Domain annotation for each sequence (and alignments):
>> XP_318631.5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.59      0.59      50      65 ..       9      24 ..       5      26 .. 0.78
   2 !   11.5   0.1   1.2e-05   1.2e-05      55      74 ..     160     179 ..     154     180 .. 0.90
   3 !  139.7   0.2     2e-45     2e-45       2     114 ..     179     288 ..     178     289 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.59
          DM9 50 kepseyeWvpssdgsv 65
                 +++ ey++vp+ +g v
  XP_318631.5  9 EDKLEYRFVPTGNGVV 24
                 5677899999999976 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.2e-05
          DM9  55 yeWvpssdgsvpkgAvegGt 74 
                    Wv + +g++p++Av+gG 
  XP_318631.5 160 ACWVAAANGEIPPNAVVGGS 179
                  68****************96 PP

  == domain 3  score: 139.7 bits;  conditional E-value: 2e-45
          DM9   2 sdgspiYvgRakhegdllpgkvvpekgaayvsyggkehekseyevLvakepseyeWvpssdgsvpkgAvegGttedgeplyigrakyegsltiGkvhp 99 
                  sdg+++Y+gRa+heg ++pgkvv+++g++y+++gg e+ k eyevL++      e+vp+s+ ++p+ A+ +G++edgepl+igr+++eg++t+Gkv+p
  XP_318631.5 179 SDGEDMYIGRAQHEGGIIPGKVVASHGVCYIAWGGAENPKAEYEVLCD---FGGEFVPASGSDIPPTALPAGESEDGEPLFIGRVTHEGTVTVGKVQP 273
                  69*********************************************4...789******************************************** PP

          DM9 100 shkvlyipyggkevs 114
                  sh+v+yipygg+e++
  XP_318631.5 274 SHGVCYIPYGGQELA 288
                  *************97 PP



Or compare XP_318631.5 to CDD or PaperBLAST