XP_645593.1 has 2806 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-30 92.6 35.1 1.4e-18 53.0 4.6 5.1 5 XP_645593.1
Domain annotation for each sequence (and alignments):
>> XP_645593.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.4 0.0 1.4e-06 1.4e-06 7 44 .. 364 401 .. 360 415 .. 0.88
2 ! 53.0 4.6 1.4e-18 1.4e-18 49 258 .. 488 736 .. 479 752 .. 0.76
3 ! 47.5 0.6 6.4e-17 6.4e-17 274 483 .. 789 1106 .. 784 1109 .. 0.88
4 ? -6.4 3.2 1 1 341 381 .. 1643 1683 .. 1621 1686 .. 0.73
5 ? -6.9 3.1 1 1 358 396 .. 1766 1804 .. 1765 1808 .. 0.78
Alignments for each domain:
== domain 1 score: 13.4 bits; conditional E-value: 1.4e-06
DUF4704 7 pealilngvqlvvthsiqsilesvGGiqvLfPLfsqld 44
+a +++ ++ +t si+++++ +GG+q++fPL++ ++
XP_645593.1 364 INAFSIGDLKIFSTFSIKDSIYLIGGPQIIFPLLQAIE 401
56777889999***********************9776 PP
== domain 2 score: 53.0 bits; conditional E-value: 1.4e-18
DUF4704 49 deqlegeseadeklcatlleliaelleesetnqqqllrlkGflvlsflLqsv.......spkhLtlevlsa..lksllkvlkslan......selLlk 131
d ++ ++ +++ + +l++i++ll + + nq++l+ ++G+++l++l ++ +++ + ++l++ + ++++l++l++ ++lL
XP_645593.1 488 DINQLSK-LINYPRISSILRFITHLLINDKYNQKELIGSNGLSLLGYLISNIfsnsdsnPSHPYNFKTLEReeFDLIFDALDQLTDfslvdkNPLLKL 584
4444444.677777899*****************************9998763333332233467788764336677788877744445665777778 PP
DUF4704 132 dlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlrlldilkqfYwvena.......................ksksgvtsksl 206
++ ++i++n+++W++ + e Q +L+ ++ ++ +++ + r+ + V lld +k+fY ++ +++++ ++++
XP_645593.1 585 NIYKEIIFNFNIWVHIKKEYQIQLFNLIIFKVSQNP---QYFRENIKVRYLLDCIKYFYHINENtiistnnnnnnnnigessgannnNNNNNNNTNNV 679
89999***********************99999998...5578877888***********98888999999888888888888777644444444445 PP
DUF4704 207 leeRp....sqeeilklrallLslieqlvrks.seisesevkalinyletvqddenv 258
+ R s++++ ++ ++++ +i+ +++ +e + e++ +i+++++++ + v
XP_645593.1 680 GNCRLnchlSNQDLKEIISYIFDIIKIIIKPIlNEKEVPEIQEIIKFIQDSECNSTV 736
554434445999**************9998766778999999999999887755544 PP
== domain 3 score: 47.5 bits; conditional E-value: 6.4e-17
DUF4704 274 asflealdskggieiflkLLsreseaiRllaLkllgklllrspvkrks.........evmeaknlfs.liserLllfseeltdktynvLfevllek 359
+ fl++++s+g i+ +l LL++++e + +l k++gk + s + +++++ + ++ i+++L+ f+ +t+ +y+ L e+++++
XP_645593.1 789 KGFLNSFESSGDIKSLLGLLKHNNEQVQVLVIKIIGKYMGGSEGLSMAssgnvrrslKLKNTLTDVLyFITDQLMEFE--MTELMYRGLSEIVVDE 882
6699**********************************9998776666688999988555554444447*********..**************** PP
DUF4704 360 aspkivlekhsepeks.................................................sklelPqilkviakllsqskdsesielrkki 406
++p+i + +s+ + ++ + + l++i +l + l++ki
XP_645593.1 883 ITPSIADTPNSPLLELlgsetlladsissvnimggsnnnnnnnnnnsnnnkdkidsnnkdkdskeKRIINIAALETICRLAIRAPL----ALQQKI 974
****77766666665577778888889999999999999999********************999899999999999998766554....689*** PP
DUF4704 407 LsdllvLlksnrenrrallqmsvWqewLvalaklaei.........................................................ke 445
L+++l +k+ ++ r +l+ ++Wq+wL++l + ++
XP_645593.1 975 LNEILLCIKHLPQMRAGILDSENWQHWLLSLWPQPRSntssppwsppisplltstksmspspppppplssssyqqqqqniisdhrsqtkeqlsiRA 1070
******************************998877789999****************************99999999999888877666666555 PP
DUF4704 446 eeeseikelvielfkvLlvhalktekgGwrvlvdtlai 483
++ s ike+ ++kvLl+ + + k+Gw+ +++t a
XP_645593.1 1071 YQ-SGIKEILTGIMKVLLFDCI-NKKDGWKFIEETEAW 1106
55.*******************.9**********9775 PP
== domain 4 score: -6.4 bits; conditional E-value: 1
DUF4704 341 seeltdktynvLfevllekaspkivlekhsepekssklelP 381
+++l ++ ++ L + + +++ ++++++++++ +l+lP
XP_645593.1 1643 QQQLRMEQQQQLRLEQQQQKLQQQQQQQQQQQQSQQSLQLP 1683
33588888888887777788888888888888888888888 PP
== domain 5 score: -6.9 bits; conditional E-value: 1
DUF4704 358 ekaspkivlekhsepekssklelPqilkviakllsqskd 396
++ +++ +++h++++++ +++ l + +ll++s+
XP_645593.1 1766 NQHQQQQAQQQHQQQQQQHQFKRSTSLSANQTLLNTSST 1804
566788999999999999999988888888888877765 PP
Or compare XP_645593.1 to CDD or PaperBLAST