PaperBLAST – Find papers about a protein or its homologs

 

Align XP_755754.2 to TIGR00110

XP_755754.2 has 606 amino acids

Query:       TIGR00110  [M=543]
Accession:   TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.8e-223  728.9   2.7   2.1e-223  728.7   2.7    1.0  1  XP_755754.2  


Domain annotation for each sequence (and alignments):
>> XP_755754.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  728.7   2.7  2.1e-223  2.1e-223       2     542 ..      53     603 ..      52     604 .. 0.98

  Alignments for each domain:
  == domain 1  score: 728.7 bits;  conditional E-value: 2.1e-223
    TIGR00110   2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkahalDa 99 
                  ++a+l+atGl++ed++k ++++++ + + +P+++hl dl+++v+e++++aG v ++fnt++vsD i+mg++Gm+ysL+sr++iaDs+etv+ ++++Da
  XP_755754.2  53 SQAMLYATGLTEEDMNKAQVGISSVWYNGNPCNMHLLDLSNRVREGVQKAGLVGFQFNTVGVSDAISMGTKGMRYSLQSRDLIADSIETVMGGQWYDA 150
                  79************************************************************************************************ PP

    TIGR00110 100 lvvissCDkivPGmlmaalrlniPaivvsGGpmeag..ktklsekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansmaclteal 195
                  ++ i+ CDk++PG+lma+ r+n+P+++v+GG++++g  +t+   +id+v++f+a+g+   g+++e+++ +i r+acP+ g+C+G++tan+ma++ e++
  XP_755754.2 151 NISIPGCDKNMPGVLMAMGRVNRPSLMVYGGTIKPGcaRTQNNADIDIVSAFQAYGQFLTGEITENQRFDIIRNACPGGGACGGMYTANTMATAIEVM 248
                  ***********************************9334555889***************************************************** PP

    TIGR00110 196 GlslPgsstllatsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrlsrkvPllaklkP 293
                  G++lPgss+ +a s+ k   +  +g+ i+ l+k++i+P+dilt++afena+ ++ ++GGstn+vLhl+aia+++g+kl+++df+++s+++P la+lkP
  XP_755754.2 249 GMTLPGSSSNPAESKAKDLECLAAGEAIKRLLKEDIRPSDILTRQAFENAMIVVNITGGSTNAVLHLIAIADSVGIKLDIEDFQKVSDRTPFLADLKP 346
                  ************************************************************************************************** PP

    TIGR00110 294 sgkkviedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlrvdqdvirsldnpvkkegglavLkGnlaeeGavvkiagveedilkfeG 391
                  sgk+v++dlh+ GG++++lk l keg+++   +tvtG+tla++lekv+  ++dq++ir+l+np+kk+g++++L+G+la+ G+v ki+g+e   ++f G
  XP_755754.2 347 SGKYVMADLHNIGGTPSLLKFLLKEGVIDGSGMTVTGETLAKNLEKVPDFPADQKIIRPLSNPIKKTGHIQILRGSLAPGGSVGKITGKEG--TRFVG 442
                  *******************************************************************************************..***** PP

    TIGR00110 392 pakvfeseeealeailggkvkeGd..vvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDk 487
                  +a+vf++e+++++a+ + ++k+ +  vvviry GPkGgPGm+emL+P+sal+g+GLg+++aLitDGrfsGg++G++iGh++Peaa+gG+i+lv+dGD+
  XP_755754.2 443 KARVFDDEDDFIAALERNEIKKEEktVVVIRYTGPKGGPGMPEMLKPSSALMGAGLGSSCALITDGRFSGGSHGFLIGHIVPEAAVGGPIGLVKDGDT 540
                  ********************998888************************************************************************ PP

    TIGR00110 488 ikiDienrkldlevseeelaerrakakkkea........revkgaLakyaklvssadkGavld 542
                  i+iD+e+r ldl+v+e ela+rr+++++ ++         +++g+L kya+ v+ a++G+++d
  XP_755754.2 541 ITIDAEKRLLDLDVDETELARRRKEWEALRDagklpqtgLTMRGTLGKYARTVKDASHGCITD 603
                  ***************************998889999998889******************987 PP



Or compare XP_755754.2 to CDD or PaperBLAST