PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::2ckbA to PF09291 (DUF1968)

biolip::2ckbA has 202 amino acids

Query:       DUF1968  [M=81]
Accession:   PF09291.14
Description: Domain of unknown function (DUF1968)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-42  129.4   3.7    3.3e-42  128.7   1.3    2.2  2  biolip::2ckbA  


Domain annotation for each sequence (and alignments):
>> biolip::2ckbA  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.035     0.035      56      68 ..      79      91 ..      64     103 .. 0.78
   2 !  128.7   1.3   3.3e-42   3.3e-42       1      81 []     118     198 ..     118     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.035
        DUF1968 56 avaWsnksdfkCq 68
                    v+Ws+++ + C+
  biolip::2ckbA 79 SVHWSDSAVYFCA 91
                   5899999998886 PP

  == domain 2  score: 128.7 bits;  conditional E-value: 3.3e-42
        DUF1968   1 PavYqLkspkssdtsvCLfTDFdsqvnvsqskeseviktdktvldmksldsKSngavaWsnksdfkCqdtfkeetaflsss 81 
                    PavY Lk+p+s+d+++CLfTDFdsq+nv +++es +++td tvldmk++dsKSnga+aWsn+++f+Cqd+fke++a+++ss
  biolip::2ckbA 118 PAVYALKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDATVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSS 198
                    9*****************************************************************************997 PP



Or compare biolip::2ckbA to CDD or PaperBLAST