biolip::2okcB has 426 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-15 43.3 0.0 4.2e-15 42.1 0.0 1.6 1 biolip::2okcB
Domain annotation for each sequence (and alignments):
>> biolip::2okcB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.1 0.0 4.2e-15 4.2e-15 18 187 .. 154 322 .. 150 330 .. 0.75
Alignments for each domain:
== domain 1 score: 42.1 bits; conditional E-value: 4.2e-15
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaa.llganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.iefsqad 111
a+v + + ge+ DP CG+G++l+ a ++ + a + ++++ ++ l g+D+ + vv+ a N+ g+g +++ d
biolip::2okcB 154 QAMVDCINPQMGETVCDPACGTGGFLLTAYdYMKGQSAS------------KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDrSPIVCED 237
79************************9886245555552............223333366669**********************86505566655 PP
UPF0020 112 aakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer.alrkvkek 187
+ +++ vdvi++npP+G r ++ ++Y e fl+ + +l++ggr+++++++n +e+ ++e + r + +
biolip::2okcB 238 SL--EkEPSTLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETiRKRLLQDF 322
55..4458889************965555543678997533344448999999999***********99999888776555555555 PP
Or compare biolip::2okcB to CDD or PaperBLAST