PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::2yplD to PF09291 (DUF1968)

biolip::2yplD has 199 amino acids

Query:       DUF1968  [M=81]
Accession:   PF09291.14
Description: Domain of unknown function (DUF1968)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-41  124.4   5.0    7.2e-41  124.4   5.0    2.1  2  biolip::2yplD  


Domain annotation for each sequence (and alignments):
>> biolip::2yplD  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.078     0.078      39      53 ..      14      28 ..       3      43 .. 0.67
   2 !  124.4   5.0   7.2e-41   7.2e-41       1      74 [.     116     189 ..     116     199 .] 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.078
        DUF1968 39 tdktvldmksldsKS 53
                    d++v++   +ds S
  biolip::2yplD 14 GDSSVINCTYTDSSS 28
                   456666666666654 PP

  == domain 2  score: 124.4 bits;  conditional E-value: 7.2e-41
        DUF1968   1 PavYqLkspkssdtsvCLfTDFdsqvnvsqskeseviktdktvldmksldsKSngavaWsnksdfkCqdtfkee 74 
                    PavYqL+++kssd+svCLfTDFdsq+nvsqsk+s+v++tdk vldm+s+d+KSn+avaWsnksdf+C+++f+++
  biolip::2yplD 116 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNS 189
                    9***********************************************************************94 PP



Or compare biolip::2yplD to CDD or PaperBLAST