biolip::3b1fA has 286 amino acids
Query: PDH_N [M=154]
Accession: PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-34 104.6 0.0 2.7e-34 104.1 0.0 1.2 1 biolip::3b1fA
Domain annotation for each sequence (and alignments):
>> biolip::3b1fA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.1 0.0 2.7e-34 2.7e-34 1 153 [. 21 173 .. 21 174 .. 0.94
Alignments for each domain:
== domain 1 score: 104.1 bits; conditional E-value: 2.7e-34
PDH_N 1 laralrrkgfkvtvigydideekakaalelglvdeatddiea.vkeadivllavPvevilevlkelap.hlkedalitDvgsvKekvvkelekllk 94
la+ ++r +++ +++gy++++ +++ ale+g+vdeat d++ + ad+++lavP++++++ +k la lked++itD gs+K ++v+++e lk
biolip::3b1fA 21 LALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVfAALADVIILAVPIKKTIDFIKILADlDLKEDVIITDAGSTKYEIVRAAEYYLK 116
6899***********************************66526778********************999*************************9 PP
PDH_N 95 ..gksfvgghPmaGteksGvdaareelfenavviLtPtektdkealelvkelleevgarvi 153
++fvg+hPma sG aa+ +lfena +i P+ t ++ + +++ll ++ ar +
biolip::3b1fA 117 dkPVQFVGSHPMA----SGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYV 173
8668********8....469************************************99976 PP
Or compare biolip::3b1fA to CDD or PaperBLAST