biolip::3d1lB has 259 amino acids
Query: DUF2520 [M=125]
Accession: PF10728.14
Description: Domain of unknown function (DUF2520)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-45 139.5 0.3 6.4e-45 138.2 0.1 1.7 2 biolip::3d1lB
Domain annotation for each sequence (and alignments):
>> biolip::3d1lB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 0.15 0.15 44 65 .. 16 37 .. 12 60 .. 0.57
2 ! 138.2 0.1 6.4e-45 6.4e-45 1 125 [] 131 256 .. 131 256 .. 0.97
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.15
HHTCHHHHHHHHHHHHHCTT-S CS
DUF2520 44 asNflvtllalaeelleeagle 65
a N+ +l++ + ++++ + +
biolip::3d1lB 16 ATNLAKALYRKGFRIVQVYSRT 37
5566666666666555544444 PP
== domain 2 score: 138.2 bits; conditional E-value: 6.4e-45
--EEEE-.-TTCHHHHHHHHHHHSS-EEE--GGGHHHHHHHHHHHHTCHHHHHHHHHHHHHCTT-S.HHHHHHHHHHHHHHHHHHS-HHHH--SHH CS
DUF2520 1 ipfaieg.deealevleelaeslggkvveidsekrklyHaAavfasNflvtllalaeelleeagleeafellapLieetlenilelgpeealTGPv 95
ipf+ie+ + e+ ++l+++a++l+++v+ +dse+rk +H+Aavf +Nf+++++ala+ell++++l+ f+++ pLi+et+++++el+p+ a+TGP+
biolip::3d1lB 131 IPFFIEAsSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLP--FDVMLPLIDETARKVHELEPKTAQTGPA 224
79****************************************************************..**************************** PP
HHT-HHHHHHHHH......HHHHHCS-SHHH. CS
DUF2520 96 aRgDaetvekhle..aldpelkelYralsksi 125
R+D++++ +hl+ a+dp +++lY++ls+si
biolip::3d1lB 225 IRYDENVIGNHLRmlADDPAMQRLYELLSRSI 256
*************5555************986 PP
Or compare biolip::3d1lB to CDD or PaperBLAST