biolip::3lduA has 377 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-60 189.3 0.0 4.9e-60 188.7 0.0 1.2 1 biolip::3lduA
Domain annotation for each sequence (and alignments):
>> biolip::3lduA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 188.7 0.0 4.9e-60 4.9e-60 1 193 [. 164 364 .. 164 367 .. 0.95
Alignments for each domain:
== domain 1 score: 188.7 bits; conditional E-value: 4.9e-60
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear..aelklygs 82
RgyR+ + ap++etLAa+l++l+ wk+g++l+DPmCGsGtilIEaa++g n+apgl+ref++e +++ a +++ + k+yg
biolip::3lduA 164 RGYREKK--APIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEkwrtldkkiwwdVRKDAFNKIDneSKFKIYGY 257
7888877..*******************************************************************8888777766336666**** PP
UPF0020 83 DldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekalee 178
D+d++ ++ areNae agv++ ief++ da++++ +e+e++ i+tnpPYGerl++k ++++LY+e++ ++ + l++ ++ +l+++++++e +++
biolip::3lduA 258 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFK-SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKN--WSYYLITSYEDFEYEFGQ 349
**********************************.999*******************************999.999..****************** PP
UPF0020 179 ralrkvkeknvklgl 193
+a +k+k++n++l++
biolip::3lduA 350 KADKKRKLYNGMLKT 364
***********9876 PP
Or compare biolip::3lduA to CDD or PaperBLAST