PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::3tsaB to PF06722 (EryCIII-like_C)

biolip::3tsaB has 372 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.18
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-34  105.7   2.8    1.2e-34  105.6   0.2    2.2  3  biolip::3tsaB  


Domain annotation for each sequence (and alignments):
>> biolip::3tsaB  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.43      0.43      29      47 ..       8      26 ..       4      32 .. 0.78
   2 ?   -0.9   0.0     0.079     0.079      22      49 ..      83     111 ..      77     116 .. 0.71
   3 !  105.6   0.2   1.2e-34   1.2e-34      12     143 ..     238     371 ..     227     372 .] 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.43
                    --SSEEE--S--HHHHGGG CS
  EryCIII-like_C 29 lPdnvRlvdfvPlgvlLpt 47
                    lP    l+++vPl+  L++
   biolip::3tsaB  8 LPYPTHLMAMVPLCWALQA 26
                    6777788999999998886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.079
                     TTSS-SS--SSEEE--.S--HHHHGGG-S CS
  EryCIII-like_C  22 aredlaslPdnvRlvd.fvPlgvlLptca 49 
                     a++ l +lP+ +Rl++ + P   l++ ca
   biolip::3tsaB  83 AQSSLDQLPEYLRLAEaWRPSVLLVDVCA 111
                     6788999******9962556555555554 PP

  == domain 3  score: 105.6 bits;  conditional E-value: 1.2e-34
                     SEEEE---TTTTSS-SS--SSEEE--S--HHHHGGG-SEEEE---HHHHHHHHHTT--EEE---SHHHHHHHHHHHHHTSEEE--TTT--HH..H CS
  EryCIII-like_C  12 aeivvtldararedlaslPdnvRlvdfvPlgvlLptcaaivhhGGaGstltalhaGvPqivlpdgaDrlvraqrvaelGaGialpkdeldad..s 104
                      e v++++ ++r  l++lPdn R+++ vPl  +L+tc+ ++  GG+G+  ta   G+Pq+vlp+  D++  a+++a+ GaGi lp ++ ++d  +
   biolip::3tsaB 238 VEAVIAVPPEHRALLTDLPDNARIAESVPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDheQ 332
                     4899*********************************************************************************9876654228 PP

                     HHHHHHHHHH-HHHHHHHHHHHHHHHTS--HHHHHHHHH CS
  EryCIII-like_C 105 laeavarvledpayreaaaklaeealaePkPtevvkklv 143
                      + ++a vl+d  + +aa kl +e  a P P+ +v++l+
   biolip::3tsaB 333 FTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLE 371
                     99********************************99987 PP



Or compare biolip::3tsaB to CDD or PaperBLAST