biolip::3v97A has 667 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-67 212.3 0.0 6e-64 201.5 0.0 2.3 2 biolip::3v97A
Domain annotation for each sequence (and alignments):
>> biolip::3v97A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 201.5 0.0 6e-64 6e-64 1 196 [. 163 373 .. 163 374 .. 0.97
2 ! 8.6 0.0 7.4e-05 7.4e-05 79 158 .. 536 613 .. 503 630 .. 0.78
Alignments for each domain:
== domain 1 score: 201.5 bits; conditional E-value: 6e-64
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk.. 78
RgyR+ +g ap+ketLAaa+v+++gw++g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++ +kaea+++ar ae++
biolip::3v97A 163 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSsh 258
9**************************************************************************999999999999888566577 PP
UPF0020 79 lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkal 172
+ygsD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+ l++g ++++++npPYGe s++al +L+s ++r +k+++ g ++++l++++ +l
biolip::3v97A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKGPYGTVLSNPPYGE---SEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDL 349
**************************************999***************7...69******************99..************ PP
UPF0020 173 ekaleeralrkvkeknvklglllk 196
++l+ ra +++k+kn++l++++k
biolip::3v97A 350 LSCLQLRADKQYKAKNGPLDCVQK 373
*********************997 PP
== domain 2 score: 8.6 bits; conditional E-value: 7.4e-05
UPF0020 79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrg 158
+D+ r +++ a++N++ g++++ + + qad a Lr++++++d+i +pP + + +++ +L ++ lkr lr
biolip::3v97A 536 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPTFSAFDVQRDHLAL----MKDLKRLLRA 613
5679******************9988653677776256889999**********77777777666555....5556666666 PP
Or compare biolip::3v97A to CDD or PaperBLAST