biolip::3v97B has 641 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-62 196.9 0.0 3.1e-59 186.1 0.0 2.3 2 biolip::3v97B
Domain annotation for each sequence (and alignments):
>> biolip::3v97B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 186.1 0.0 3.1e-59 3.1e-59 4 196 .. 145 350 .. 143 351 .. 0.95
2 ! 8.5 0.0 7.8e-05 7.8e-05 79 158 .. 509 587 .. 476 604 .. 0.76
Alignments for each domain:
== domain 1 score: 186.1 bits; conditional E-value: 3.1e-59
UPF0020 4 RvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk..lyg 81
R + ap+ketLAaa+v+++gw++g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++ +kaea+++ar ae++ +yg
biolip::3v97B 145 RGYRDIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSshFYG 240
5566678*****************************************************************999999999999888566577*** PP
UPF0020 82 sDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkaleka 175
sD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+ l++g ++++++npPY s++al +L+s ++r +k+++ g ++++l++++ +l ++
biolip::3v97B 241 SDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKGPYGTVLSNPPY-----SEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSC 329
***********************************999**************.....689*****************99..*************** PP
UPF0020 176 leeralrkvkeknvklglllk 196
l+ ra +++k+kn++l++++k
biolip::3v97B 330 LQLRADKQYKAKNGPLDCVQK 350
******************997 PP
== domain 2 score: 8.5 bits; conditional E-value: 7.8e-05
UPF0020 79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP.YGerlgskkalekLYseflrelkrvlrg 158
+D+ r +++ a++N++ g++++ + + qad a Lr++++++d+i +pP + ++ ++++ + ++++ lkr lr
biolip::3v97B 509 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPtFSNA----FDVQRDHLALMKDLKRLLRA 587
5679******************9988653677776256889999**********44444....44444455556667777777 PP
Or compare biolip::3v97B to CDD or PaperBLAST