PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::4riiA to PF06722 (EryCIII-like_C)

biolip::4riiA has 354 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.16
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-42  130.5   1.8    2.4e-42  130.5   1.8    1.7  2  biolip::4riiA  


Domain annotation for each sequence (and alignments):
>> biolip::4riiA  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.36      0.36      56      71 ..     114     132 ..     112     139 .. 0.57
   2 !  130.5   1.8   2.4e-42   2.4e-42       4     144 ..     214     351 ..     211     352 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.36
  EryCIII-like_C  56 Gagstlta...lsfGvPqv 71 
                     G+ s ++a   +  GvP v
   biolip::4riiA 114 GSMSFAAAliaAELGVPYV 132
                     5555555511156799976 PP

  == domain 2  score: 130.5 bits;  conditional E-value: 2.4e-42
  EryCIII-like_C   4 ldqvaelDaEivvaldedarpdlrelpdnvRlvdfvPlgvllptcaaivHhgGagstltalsfGvPqvvlpdeadaavrarrvaelGagivlskd 98 
                     l   ++lDaE+v+a  ++ +++lr  +++vR +++vPl+v++ptc+++vHh+G+ + lta+ +GvPq+++p++ +    + r+ ++Ga+i+  +d
   biolip::4riiA 214 LVTSGALDAEVVIATLDEVAEELRTELPGVR-AGWVPLDVVVPTCDVVVHHAGGVTALTAMNAGVPQLIVPQGGNFVEAGLRISDFGAAIT--VD 305
                     667799********999**************.*******************************************999***********97..68 PP

  EryCIII-like_C  99 eltsdsiakavaevvedpayraaaaklaeeiaaePsPtEvakklee 144
                     e t++ ++ka++e++++p+y + a +l +eiaa P P+Ev+  le 
   biolip::4riiA 306 ENTPEAVEKACGELIGNPSYAERARELSAEIAALPLPAEVVGALEG 351
                     99***************************************99986 PP



Or compare biolip::4riiA to CDD or PaperBLAST