biolip::5e72A has 323 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.5e-27 80.2 0.0 6.2e-26 77.4 0.0 2.0 1 biolip::5e72A
Domain annotation for each sequence (and alignments):
>> biolip::5e72A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.4 0.0 6.2e-26 6.2e-26 3 171 .. 156 290 .. 154 316 .. 0.90
Alignments for each domain:
== domain 1 score: 77.4 bits; conditional E-value: 6.2e-26
UPF0020 3 yRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaek 98
R+f+ p +L +++++alv+l+++ ++ +lDP+ G G+ilIEa+llg +++ g+D+ +++v+ga++N+++
biolip::5e72A 156 HRPFFRPISLHPRVSRALVNLTKA--TREILDPFMGAGGILIEAGLLGLRVY--------------------------GVDIRPEMVEGAETNLKH 223
79*******************965..678*********************99..........................****************** PP
UPF0020 99 agvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenka 171
+gv d +++ da+ L+ +++++++++t+pPY +r ++LY++ lr++ +vl+ ggrl+++++++ +
biolip::5e72A 224 YGVRDY-TLKLGDATRLEdlFPDKKFEAVATDPPYRKR-------DELYRKALRSIYNVLEDGGRLAIAFPTDFN 290
***996.678889****9887888***********776.......89***********************98755 PP
Or compare biolip::5e72A to CDD or PaperBLAST