biolip::6zxvA has 325 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.8e-52 161.6 0.0 2.9e-51 160.1 0.0 1.7 1 biolip::6zxvA
Domain annotation for each sequence (and alignments):
>> biolip::6zxvA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 160.1 0.0 2.9e-51 2.9e-51 1 196 [. 153 318 .. 153 319 .. 0.95
Alignments for each domain:
== domain 1 score: 160.1 bits; conditional E-value: 2.9e-51
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNa 96
+++R+f +p+++k++LA+alv+l+g+ +ge+llDPmCG+G++lIEa+l+g n + g+D+++++v+g+r N+
biolip::6zxvA 153 PDRRPFLMPSAIKPKLARALVNLTGVLEGETLLDPMCGTGSFLIEAGLMGINPI--------------------------GIDFIEKIVRGCRVNL 222
689***************************************************..........................**************** PP
UPF0020 97 ekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklg 192
e++g+++++ + +a++ Lr +++v+ i+t++PY ++++++++l++LYs++++e++rvl++ggr++++ +n ++e+++++ ++++++e++v+++
biolip::6zxvA 223 EYYGIEGSVLLGDAKNLPLR--DESVRGIATDYPYLRSTKAAGTLDELYSKTSEEFERVLKKGGRAAIV--TNIDVESFFSNFEIEMKTEERVHGS 314
***********997777777..559*************************************8888776..5899********************* PP
UPF0020 193 lllk 196
l+++
biolip::6zxvA 315 LTRR 318
9986 PP
Or compare biolip::6zxvA to CDD or PaperBLAST