PaperBLAST – Find papers about a protein or its homologs

 

Align biolip::8q8oB to PF09938 (DUF2170)

biolip::8q8oB has 138 amino acids

Query:       DUF2170  [M=137]
Accession:   PF09938.13
Description: Uncharacterized protein conserved in bacteria (DUF2170)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-53  166.1   0.0    2.1e-53  166.0   0.0    1.0  1  biolip::8q8oB  


Domain annotation for each sequence (and alignments):
>> biolip::8q8oB  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.0   0.0   2.1e-53   2.1e-53       2     137 .]       3     136 ..       2     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.0 bits;  conditional E-value: 2.1e-53
        DUF2170   2 wtleelaeaLaeaeevqedeaevevvegeeevLlvtlkeygdLpifvavsgeqilvealLveedevkdraelneelLrtqklfPLssvgiekvdge 97 
                    w++++laeaL+ +e+++++ea++e++eg+e++L+v+++eygdLp+fva +geqi+vealL++e++v+d++++nee+L +++lfPLss+g   +++e
  biolip::8q8oB   3 WNARSLAEALSGTELFSSGEAQIELIEGAEASLYVIMREYGDLPVFVAPQGEQIIVEALLWPESDVTDATAFNEEVLLSRQLFPLSSIG--LLNEE 96 
                    *****************************************************************************************..579** PP

        DUF2170  98 dyYvlfGaLsakSslediveEietLadnvidaaealeeyl 137
                     +Y +fGaLs++Ssl+++++EietLa nvi+a+e ++ yl
  biolip::8q8oB  97 RCYSMFGALSTTSSLASVLHEIETLAGNVIRATEVYAGYL 136
                    ************************************9996 PP



Or compare biolip::8q8oB to CDD or PaperBLAST