biolip::8sseA has 507 amino acids
Query: Met_synt_B12 [M=273]
Accession: PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-41 127.0 0.0 6.7e-41 126.5 0.0 1.2 1 biolip::8sseA
Domain annotation for each sequence (and alignments):
>> biolip::8sseA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.5 0.0 6.7e-41 6.7e-41 36 257 .. 280 506 .. 243 507 .] 0.88
Alignments for each domain:
== domain 1 score: 126.5 bits; conditional E-value: 6.7e-41
Met_synt_B12 36 eakklfkdAqamLkkiieekllkakavvglfpAnsegddievyadesrseelatlhtLrqqaekeegkpnlclaDfvapk................ 115
ea+ +f q++Lk+ ++e +l+ k ++g+fp +eg+++ v++ e+ e+l+++++ rq+ l+l D+ +p+
biolip::8sseA 280 EAEPVF---QRLLKEAMAEGWLEPKVLYGFFPVAREGEELLVFSPET-GEVLERFRFPRQK------GGGLSLVDYFRPRfaaplgdeadwmpkea 365
555554...79*******************************97766.5678999999988......34699999999999999999999999999 PP
Met_synt_B12 116 .esgvkDyiGlFavtaglgieelakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdeklsneelikekYqgiRpApGYpacpdh 210
++g +D++G+ vt+g +++a+++ a+ + v+ + ++eA+ae+ h+++r+ +Wg a++++ ++++l+++ Yqg R+++GYpacpd
biolip::8sseA 366 fRAGARDVLGVQLVTMGEAPSRKAQALFASGAYQDYLFVHGFSVEMTEALAEYWHKRMRQ-MWGIAHQDATEIQKLFQQGYQGARYSFGYPACPDL 460
999***************9999999998885555568899*******************7.8********************************** PP
Met_synt_B12 211 tekktlfelldaeekigieLteslamtPaasvsGlyfahpearyFav 257
+++l +l+ +++ +g++Lte++ + P+ + s+l++ hpearyF+v
biolip::8sseA 461 ADQAKLDRLMGFHR-VGVRLTENFQLEPEHATSALVVHHPEARYFSV 506
*************9.******************************99 PP
Or compare biolip::8sseA to CDD or PaperBLAST