biolip::8sseA has 507 amino acids
Query: Met_synt_B12 [M=273]
Accession: PF02965.22
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-41 126.5 0.0 9.3e-41 126.1 0.0 1.2 1 biolip::8sseA
Domain annotation for each sequence (and alignments):
>> biolip::8sseA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.1 0.0 9.3e-41 9.3e-41 34 257 .. 278 506 .. 243 507 .] 0.88
Alignments for each domain:
== domain 1 score: 126.1 bits; conditional E-value: 9.3e-41
Met_synt_B12 34 geeakklfkdAqamLkkiieekllkakavvglfpansvgddievyadesrseelatlhtLrqqaekeegepnlclaDfvapk.............. 115
++ea+ +f q++Lk+ ++e +l+ k ++g+fp ++g+++ v++ e+ e+l+++++ rq+ l+l D+ +p+
biolip::8sseA 278 EREAEPVF---QRLLKEAMAEGWLEPKVLYGFFPVAREGEELLVFSPET-GEVLERFRFPRQK------GGGLSLVDYFRPRfaaplgdeadwmpk 363
55555555...68*******************************97777.5678999999988......456999999999999999999999999 PP
Met_synt_B12 116 ...esgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgyakdeklsneelikekYqGiRpApGYpacp 208
++g +D++G+ vt+g +++a+++ a+ + v+ + ++eA+ae+ h+++r+ +Wg a++++ ++++l+++ YqG R+++GYpacp
biolip::8sseA 364 eafRAGARDVLGVQLVTMGEAPSRKAQALFASGAYQDYLFVHGFSVEMTEALAEYWHKRMRQ-MWGIAHQDATEIQKLFQQGYQGARYSFGYPACP 458
99999***************9999999988885555568899*******************7.7******************************** PP
Met_synt_B12 209 dhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFav 257
d +++l +l+ +++ +g++Lte++ + P+ + s+l++ hpe++yF+v
biolip::8sseA 459 DLADQAKLDRLMGFHR-VGVRLTENFQLEPEHATSALVVHHPEARYFSV 506
***************9.******************************99 PP
Or compare biolip::8sseA to CDD or PaperBLAST