VIMSS1749909 has 246 amino acids
Query: UPF0016 [M=75]
Accession: PF01169.23
Description: Uncharacterized protein family UPF0016
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-48 148.9 31.9 3.6e-27 80.9 8.1 3.0 3 VIMSS1749909
Domain annotation for each sequence (and alignments):
>> VIMSS1749909
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.3 9.6 4.7e-26 4.7e-26 3 75 .] 8 80 .. 6 80 .. 0.99
2 ! 80.9 8.1 3.6e-27 3.6e-27 2 75 .] 107 180 .. 106 180 .. 0.98
3 ? 1.0 0.4 0.031 0.031 38 63 .. 199 223 .. 188 230 .. 0.55
Alignments for each domain:
== domain 1 score: 77.3 bits; conditional E-value: 4.7e-26
UPF0016 3 sflliflaElGDkTqlatiaLAarykplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75
sf++if+aElGDk+ql+++++A ry+++ V+ G+tlA+ +++l++v++G++l+ +lp++l+ +va+v+F++fG
VIMSS1749909 8 SFGVIFIAELGDKSQLMAMTFALRYRWWVVLGGITLATTAVHLISVAVGHYLGAALPTHLLGIVAGVAFVFFG 80
8***********************************************************************9 PP
== domain 2 score: 80.9 bits; conditional E-value: 3.6e-27
UPF0016 2 tsflliflaElGDkTqlatiaLAarykplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75
+++++++laElGDkT+lati+LAa +++++V++G+t+++++a++la+++G+ +k+lper+++++aavlFl+fG
VIMSS1749909 107 AVTSAFLLAELGDKTMLATITLAADNDWVGVWIGSTIGMVAADALAIVVGAIAGKHLPERMIQIAAAVLFLGFG 180
57899********************************************************************9 PP
== domain 3 score: 1.0 bits; conditional E-value: 0.031
UPF0016 38 lAlalatllavllGsllakrlperlv 63
+ l ++ +la+++ +l +rl ++++
VIMSS1749909 199 ASLGIVAALAAMVFALP-ERLRPQVL 223
44445555555555444.55555555 PP
Or compare VIMSS1749909 to CDD or PaperBLAST